Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL136164.3-201ENST00000624429 3978 ntBASIC6.26□□□□□ -1.41
MSH6P52701 ACTR3BP5-201ENST00000448440 1479 ntBASIC6.26□□□□□ -1.41
MSH6P52701 MIR331-201ENST00000362302 94 ntBASIC6.26□□□□□ -1.41
MSH6P52701 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSH6P52701 MIR483-201ENST00000385070 76 ntBASIC6.26□□□□□ -1.41
MSH6P52701 RPL21P65-201ENST00000406094 466 ntBASIC6.26□□□□□ -1.41
MSH6P52701 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC6.26□□□□□ -1.41
MSH6P52701 AC093166.2-201ENST00000455969 1017 ntBASIC6.26□□□□□ -1.41
MSH6P52701 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC6.26□□□□□ -1.41
MSH6P52701 ANK3-207ENST00000460468 677 ntTSL 3 BASIC6.26□□□□□ -1.41
MSH6P52701 RPS20P4-201ENST00000461659 355 ntBASIC6.26□□□□□ -1.41
MSH6P52701 RN7SL691P-201ENST00000494487 301 ntBASIC6.26□□□□□ -1.41
MSH6P52701 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC6.26□□□□□ -1.41
MSH6P52701 FKBP1BP1-201ENST00000553366 325 ntBASIC6.26□□□□□ -1.41
MSH6P52701 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC6.26□□□□□ -1.41
MSH6P52701 AC127024.5-201ENST00000580085 462 ntBASIC6.26□□□□□ -1.41
MSH6P52701 RN7SL339P-201ENST00000580597 296 ntBASIC6.26□□□□□ -1.41
MSH6P52701 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC6.26□□□□□ -1.41
MSH6P52701 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC6.26□□□□□ -1.41
MSH6P52701 AC009120.7-201ENST00000623452 780 ntBASIC6.26□□□□□ -1.41
MSH6P52701 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSH6P52701 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC6.26□□□□□ -1.41
MSH6P52701 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
MSH6P52701 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
MSH6P52701 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSH6P52701 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC6.25□□□□□ -1.41
MSH6P52701 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC6.25□□□□□ -1.41
MSH6P52701 AL139039.2-201ENST00000407436 479 ntBASIC6.25□□□□□ -1.41
MSH6P52701 RPS3AP25-201ENST00000411660 793 ntBASIC6.25□□□□□ -1.41
MSH6P52701 AL445584.1-201ENST00000431451 330 ntBASIC6.25□□□□□ -1.41
MSH6P52701 RPL23AP52-201ENST00000439311 478 ntBASIC6.25□□□□□ -1.41
MSH6P52701 RPL23AP43-201ENST00000446445 471 ntBASIC6.25□□□□□ -1.41
MSH6P52701 RNU4-89P-201ENST00000607443 133 ntBASIC6.25□□□□□ -1.41
MSH6P52701 Z95327.3-201ENST00000610385 572 ntBASIC6.25□□□□□ -1.41
MSH6P52701 AC012442.3-202ENST00000636742 206 ntBASIC6.25□□□□□ -1.41
MSH6P52701 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC6.25□□□□□ -1.41
MSH6P52701 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSH6P52701 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC6.25□□□□□ -1.41
MSH6P52701 AC100778.3-201ENST00000580060 1750 ntBASIC6.25□□□□□ -1.41
MSH6P52701 PCAT14-202ENST00000627127 3935 ntBASIC6.25□□□□□ -1.41
MSH6P52701 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSH6P52701 GVINP1-202ENST00000531871 7271 ntBASIC6.25□□□□□ -1.41
MSH6P52701 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
MSH6P52701 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC6.25□□□□□ -1.41
MSH6P52701 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
MSH6P52701 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSH6P52701 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSH6P52701 AC011755.1-201ENST00000623763 2049 ntBASIC6.24□□□□□ -1.41
MSH6P52701 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSH6P52701 SNORA9-201ENST00000384215 133 ntBASIC6.24□□□□□ -1.41
MSH6P52701 AP000580.1-201ENST00000404439 358 ntBASIC6.24□□□□□ -1.41
MSH6P52701 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH6P52701 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC6.24□□□□□ -1.41
MSH6P52701 AL353748.1-201ENST00000440753 474 ntBASIC6.24□□□□□ -1.41
MSH6P52701 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH6P52701 RPL23AP53-201ENST00000521854 457 ntBASIC6.24□□□□□ -1.41
MSH6P52701 AC005868.1-201ENST00000536421 331 ntBASIC6.24□□□□□ -1.41
MSH6P52701 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC6.24□□□□□ -1.41
MSH6P52701 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC6.24□□□□□ -1.41
MSH6P52701 CR392039.5-201ENST00000623201 510 ntBASIC6.24□□□□□ -1.41
MSH6P52701 AP000648.2-201ENST00000624182 404 ntBASIC6.24□□□□□ -1.41
MSH6P52701 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC6.24□□□□□ -1.41
MSH6P52701 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSH6P52701 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
MSH6P52701 AC104260.2-201ENST00000623551 3497 ntBASIC6.24□□□□□ -1.41
MSH6P52701 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
MSH6P52701 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC6.24□□□□□ -1.41
MSH6P52701 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
MSH6P52701 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC6.23□□□□□ -1.41
MSH6P52701 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSH6P52701 RN7SKP33-201ENST00000410942 340 ntBASIC6.23□□□□□ -1.41
MSH6P52701 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC6.23□□□□□ -1.41
MSH6P52701 SNRPFP1-201ENST00000414761 252 ntBASIC6.23□□□□□ -1.41
MSH6P52701 MRPL50P1-201ENST00000431951 384 ntBASIC6.23□□□□□ -1.41
MSH6P52701 GOT2P5-201ENST00000433995 546 ntBASIC6.23□□□□□ -1.41
MSH6P52701 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC6.23□□□□□ -1.41
MSH6P52701 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC6.23□□□□□ -1.41
MSH6P52701 ISCUP1-201ENST00000454451 448 ntBASIC6.23□□□□□ -1.41
MSH6P52701 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC6.23□□□□□ -1.41
MSH6P52701 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC6.23□□□□□ -1.41
MSH6P52701 NPM1P21-201ENST00000513394 762 ntBASIC6.23□□□□□ -1.41
MSH6P52701 LSM3P2-201ENST00000551246 273 ntBASIC6.23□□□□□ -1.41
MSH6P52701 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSH6P52701 AC007546.1-201ENST00000619452 559 ntBASIC6.23□□□□□ -1.41
MSH6P52701 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC6.23□□□□□ -1.41
MSH6P52701 OR2L1P-202ENST00000641567 1023 ntBASIC6.23□□□□□ -1.41
MSH6P52701 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
MSH6P52701 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC6.23□□□□□ -1.41
MSH6P52701 CPHL1P-201ENST00000461341 3407 ntBASIC6.23□□□□□ -1.41
MSH6P52701 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC6.23□□□□□ -1.41
MSH6P52701 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC6.23□□□□□ -1.41
MSH6P52701 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC6.23□□□□□ -1.41
MSH6P52701 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC6.23□□□□□ -1.41
MSH6P52701 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
MSH6P52701 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
MSH6P52701 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSH6P52701 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
MSH6P52701 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
MSH6P52701 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC6.23□□□□□ -1.41
MSH6P52701 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms