Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC5.97□□□□□ -1.45
SMARCA1P28370 RPS4XP6-201ENST00000477670 797 ntBASIC5.97□□□□□ -1.45
SMARCA1P28370 AC004815.1-201ENST00000484185 331 ntBASIC5.97□□□□□ -1.45
SMARCA1P28370 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.97□□□□□ -1.45
SMARCA1P28370 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.97□□□□□ -1.45
SMARCA1P28370 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.97□□□□□ -1.45
SMARCA1P28370 HIGD1AP18-201ENST00000520730 278 ntBASIC5.97□□□□□ -1.45
SMARCA1P28370 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.97□□□□□ -1.45
SMARCA1P28370 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SMARCA1P28370 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC5.97□□□□□ -1.45
SMARCA1P28370 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC5.97□□□□□ -1.45
SMARCA1P28370 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC5.97□□□□□ -1.45
SMARCA1P28370 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC5.97□□□□□ -1.45
SMARCA1P28370 AC040958.1-201ENST00000561102 201 ntBASIC5.97□□□□□ -1.45
SMARCA1P28370 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.97□□□□□ -1.45
SMARCA1P28370 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC5.97□□□□□ -1.45
SMARCA1P28370 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.97□□□□□ -1.45
SMARCA1P28370 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.97□□□□□ -1.45
SMARCA1P28370 AC245036.5-201ENST00000596330 847 ntBASIC5.97□□□□□ -1.45
SMARCA1P28370 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.97□□□□□ -1.45
SMARCA1P28370 AC119674.1-212ENST00000641155 993 ntBASIC5.97□□□□□ -1.45
SMARCA1P28370 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
SMARCA1P28370 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SMARCA1P28370 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.97□□□□□ -1.45
SMARCA1P28370 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SMARCA1P28370 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.97□□□□□ -1.45
SMARCA1P28370 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
SMARCA1P28370 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.97□□□□□ -1.45
SMARCA1P28370 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
SMARCA1P28370 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.97□□□□□ -1.45
SMARCA1P28370 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.97□□□□□ -1.45
SMARCA1P28370 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
SMARCA1P28370 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
SMARCA1P28370 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.45
SMARCA1P28370 AC114947.2-201ENST00000565748 2125 ntBASIC5.96□□□□□ -1.45
SMARCA1P28370 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.96□□□□□ -1.45
SMARCA1P28370 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.96□□□□□ -1.45
SMARCA1P28370 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.96□□□□□ -1.45
SMARCA1P28370 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
SMARCA1P28370 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SMARCA1P28370 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
SMARCA1P28370 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SMARCA1P28370 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SMARCA1P28370 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
SMARCA1P28370 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 RN7SKP97-201ENST00000410966 333 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 UBE2V1P11-201ENST00000411559 285 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 LIPT1P1-201ENST00000415870 1186 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.96□□□□□ -1.46
SMARCA1P28370 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.96□□□□□ -1.46
SMARCA1P28370 CACYBPP1-201ENST00000438592 684 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.96□□□□□ -1.46
SMARCA1P28370 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.46
SMARCA1P28370 OR52E3P-201ENST00000452083 936 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 AC108161.1-201ENST00000461060 402 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 AC090114.3-201ENST00000479267 829 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.96□□□□□ -1.46
SMARCA1P28370 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC5.96□□□□□ -1.46
SMARCA1P28370 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.96□□□□□ -1.46
SMARCA1P28370 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SMARCA1P28370 OR8I1P-201ENST00000529291 931 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.96□□□□□ -1.46
SMARCA1P28370 HMGN2P6-201ENST00000551091 273 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SMARCA1P28370 OR4U1P-201ENST00000554958 912 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC5.96□□□□□ -1.46
SMARCA1P28370 AC016180.1-201ENST00000567945 403 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 MIR4675-201ENST00000577898 77 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 AC022884.2-201ENST00000578535 580 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC5.96□□□□□ -1.46
SMARCA1P28370 VN1R87P-201ENST00000596706 487 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 NIFKP6-201ENST00000598115 845 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 AC113368.1-201ENST00000603736 382 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC5.96□□□□□ -1.46
SMARCA1P28370 AL022394.1-201ENST00000606979 292 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 AC009163.6-201ENST00000612367 342 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 PART1_2.1-201ENST00000612397 250 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 AC108359.1-201ENST00000616451 1211 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC5.96□□□□□ -1.46
SMARCA1P28370 AP004607.9-201ENST00000618202 316 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
SMARCA1P28370 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.96□□□□□ -1.46
SMARCA1P28370 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
SMARCA1P28370 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SMARCA1P28370 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SMARCA1P28370 ZNF849P-201ENST00000594711 1566 ntBASIC5.96□□□□□ -1.46
SMARCA1P28370 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
SMARCA1P28370 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
SMARCA1P28370 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
SMARCA1P28370 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
SMARCA1P28370 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.95□□□□□ -1.46
SMARCA1P28370 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SMARCA1P28370 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.95□□□□□ -1.46
SMARCA1P28370 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SMARCA1P28370 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SMARCA1P28370 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
SMARCA1P28370 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SMARCA1P28370 SNURFL-201ENST00000309296 343 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
SMARCA1P28370 RN7SKP113-201ENST00000363891 295 ntBASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 145.2 ms