Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.21□□□□□ -1.58
COL4A1P02462 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC5.21□□□□□ -1.58
COL4A1P02462 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.21□□□□□ -1.58
COL4A1P02462 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC5.21□□□□□ -1.58
COL4A1P02462 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.21□□□□□ -1.58
COL4A1P02462 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL4A1P02462 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL4A1P02462 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL4A1P02462 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
COL4A1P02462 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.21□□□□□ -1.58
COL4A1P02462 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A1P02462 AC097461.1-201ENST00000568928 2821 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 AC000374.1-201ENST00000434698 1745 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A1P02462 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.2□□□□□ -1.58
COL4A1P02462 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A1P02462 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.2□□□□□ -1.58
COL4A1P02462 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
COL4A1P02462 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
COL4A1P02462 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
COL4A1P02462 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A1P02462 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A1P02462 SNORA71.3-201ENST00000362582 128 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 MIR23A-201ENST00000385245 73 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5.2□□□□□ -1.58
COL4A1P02462 DNAJA1P1-201ENST00000425106 1187 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 AL451062.2-201ENST00000427515 271 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 VTI1BP4-201ENST00000427516 527 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.2□□□□□ -1.58
COL4A1P02462 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A1P02462 AC146944.2-203ENST00000502493 354 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 AC139495.1-202ENST00000513164 354 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 CCNG2P1-201ENST00000549521 1000 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.2□□□□□ -1.58
COL4A1P02462 AC053481.3-201ENST00000577881 843 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 MIR8069-1-201ENST00000616627 86 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 MIR8069-2-201ENST00000621412 86 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A1P02462 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
COL4A1P02462 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL4A1P02462 AC068870.3-201ENST00000625077 2536 ntBASIC5.2□□□□□ -1.58
COL4A1P02462 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
COL4A1P02462 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A1P02462 TCP11X1-202ENST00000622971 1372 ntBASIC5.19□□□□□ -1.58
COL4A1P02462 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A1P02462 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A1P02462 RNA5SP175-201ENST00000364275 119 ntBASIC5.19□□□□□ -1.58
COL4A1P02462 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.19□□□□□ -1.58
COL4A1P02462 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC5.19□□□□□ -1.58
COL4A1P02462 AL133372.1-201ENST00000493565 745 ntBASIC5.19□□□□□ -1.58
COL4A1P02462 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.19□□□□□ -1.58
COL4A1P02462 KCTD9P2-201ENST00000512203 1013 ntBASIC5.19□□□□□ -1.58
COL4A1P02462 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.19□□□□□ -1.58
COL4A1P02462 LSM3P2-201ENST00000551246 273 ntBASIC5.19□□□□□ -1.58
COL4A1P02462 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.19□□□□□ -1.58
COL4A1P02462 AL356863.1-201ENST00000623378 1080 ntBASIC5.19□□□□□ -1.58
COL4A1P02462 AC112484.5-201ENST00000624189 228 ntBASIC5.19□□□□□ -1.58
COL4A1P02462 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.19□□□□□ -1.58
COL4A1P02462 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.19□□□□□ -1.58
COL4A1P02462 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL4A1P02462 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A1P02462 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
COL4A1P02462 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A1P02462 MT-RNR1-201ENST00000389680 954 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 AL358178.1-201ENST00000407698 397 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 RNU6-628P-201ENST00000410675 107 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 RNU4-6P-201ENST00000410804 122 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.18□□□□□ -1.58
COL4A1P02462 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.18□□□□□ -1.58
COL4A1P02462 snoU13.22-201ENST00000459428 104 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A1P02462 NPM1P21-201ENST00000513394 762 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.18□□□□□ -1.58
COL4A1P02462 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.18□□□□□ -1.58
COL4A1P02462 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.18□□□□□ -1.58
COL4A1P02462 AP005901.4-201ENST00000577336 569 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 AC087499.8-201ENST00000578406 226 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 AC053481.4-201ENST00000583164 216 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 BNIP3P33-201ENST00000598912 569 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 AC091905.2-201ENST00000623143 306 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A1P02462 AL133268.1-201ENST00000405676 1401 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.18□□□□□ -1.58
COL4A1P02462 AC116667.1-201ENST00000604855 2072 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A1P02462 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A1P02462 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.18□□□□□ -1.58
COL4A1P02462 AL669831.5-218ENST00000591702 1873 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A1P02462 AC005831.1-201ENST00000624384 1697 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
COL4A1P02462 AL035696.2-201ENST00000407941 709 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 AL450992.3-201ENST00000413192 568 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 LINC01881-201ENST00000416103 412 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A1P02462 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL4A1P02462 RPS11P1-201ENST00000451072 473 ntBASIC5.18□□□□□ -1.58
COL4A1P02462 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
COL4A1P02462 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC5.18□□□□□ -1.58
COL4A1P02462 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms