Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC027026.1-201ENST00000532323 742 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AL135978.1-201ENST00000553618 1266 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 PPIAP6-201ENST00000557078 499 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC090241.1-201ENST00000587732 621 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC020914.7-201ENST00000594477 545 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC005191.1-201ENST00000603950 358 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC023206.1-201ENST00000605824 298 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC009159.1-201ENST00000618386 642 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AL121985.3-201ENST00000620690 523 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC099654.5-201ENST00000636479 350 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 ERCC6-202ENST00000374127 1782 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 MTND5P28-201ENST00000438005 1594 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 JPX-212ENST00000639185 9658 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC130650.2-201ENST00000618736 2403 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 NBPF8-201ENST00000583271 5330 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 MAPK10-270ENST00000641102 3538 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC119674.1-213ENST00000641177 1386 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 KYNUP3-201ENST00000574386 1341 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 DLEU2L-201ENST00000371086 3555 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 OR5J1P-201ENST00000313544 939 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AL161781.1-201ENST00000354277 403 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 RNU6-730P-201ENST00000383954 104 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 RNU1-74P-201ENST00000384108 171 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 IGHV2-26-201ENST00000390611 381 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 RPL31P1-201ENST00000398116 372 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 SSXP10-201ENST00000402595 565 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AL356421.1-201ENST00000403255 413 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AMD1P2-201ENST00000412936 992 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 JKAMPP1-201ENST00000413804 919 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 RPL7P57-201ENST00000423238 740 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 PHB2P1-201ENST00000434943 890 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 USP9YP8-201ENST00000441913 500 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 USP9YP15-201ENST00000442391 422 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 PARD3-AS1-201ENST00000446211 302 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 GOT2P2-201ENST00000450663 1251 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 APOOP2-201ENST00000461561 539 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC087312.1-201ENST00000471411 480 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC023598.1-201ENST00000472521 361 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 RPS16P9-201ENST00000477220 427 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC023194.1-201ENST00000493084 308 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 RN7SL187P-201ENST00000495587 303 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 RPL10P7-201ENST00000495649 625 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC093767.1-201ENST00000504523 156 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC104057.1-201ENST00000515547 497 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 Vault.3-201ENST00000516676 95 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 RNU6-201P-201ENST00000517100 61 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC037450.1-201ENST00000518129 647 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 CASC11-203ENST00000519071 791 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 CARSP2-201ENST00000520688 277 ntBASIC5.32□□□□□ -1.56
CCDC140Q96MF4 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC140Q96MF4 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms