Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC42Q96M95 AL590240.1-201ENST00000334118 313 ntBASIC4.78□□□□□ -1.64
CCDC42Q96M95 RNA5SP52-201ENST00000362448 134 ntBASIC4.78□□□□□ -1.64
CCDC42Q96M95 AC007068.1-201ENST00000396690 844 ntBASIC4.78□□□□□ -1.64
CCDC42Q96M95 RPS23P10-201ENST00000416185 486 ntBASIC4.78□□□□□ -1.64
CCDC42Q96M95 ARAFP1-201ENST00000422172 605 ntBASIC4.78□□□□□ -1.64
CCDC42Q96M95 PRELID3BP10-201ENST00000431957 584 ntBASIC4.78□□□□□ -1.64
CCDC42Q96M95 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC42Q96M95 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.78□□□□□ -1.64
CCDC42Q96M95 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC42Q96M95 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC42Q96M95 PPM1AP1-201ENST00000502740 1135 ntBASIC4.78□□□□□ -1.64
CCDC42Q96M95 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC42Q96M95 PHBP17-201ENST00000528576 541 ntBASIC4.78□□□□□ -1.64
CCDC42Q96M95 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC42Q96M95 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC4.78□□□□□ -1.64
CCDC42Q96M95 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC42Q96M95 AL031320.1-201ENST00000604177 357 ntBASIC4.78□□□□□ -1.64
CCDC42Q96M95 AC098935.2-201ENST00000604222 466 ntBASIC4.78□□□□□ -1.64
CCDC42Q96M95 AC087385.3-201ENST00000620477 187 ntBASIC4.78□□□□□ -1.64
CCDC42Q96M95 AC138627.1-204ENST00000641894 765 ntBASIC4.78□□□□□ -1.64
CCDC42Q96M95 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC42Q96M95 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
CCDC42Q96M95 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.78□□□□□ -1.64
CCDC42Q96M95 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC42Q96M95 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
CCDC42Q96M95 AC125257.1-201ENST00000560400 2930 ntBASIC4.77□□□□□ -1.65
CCDC42Q96M95 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC42Q96M95 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC42Q96M95 AC006971.1-201ENST00000407916 4486 ntBASIC4.77□□□□□ -1.65
CCDC42Q96M95 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
CCDC42Q96M95 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC42Q96M95 RNU4-34P-201ENST00000410431 124 ntBASIC4.77□□□□□ -1.65
CCDC42Q96M95 GTF3AP1-201ENST00000416942 1004 ntBASIC4.77□□□□□ -1.65
CCDC42Q96M95 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC42Q96M95 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC42Q96M95 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.77□□□□□ -1.65
CCDC42Q96M95 AL049745.1-201ENST00000433953 286 ntBASIC4.77□□□□□ -1.65
CCDC42Q96M95 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC42Q96M95 RPL23AP43-201ENST00000446445 471 ntBASIC4.77□□□□□ -1.65
CCDC42Q96M95 AC079804.1-201ENST00000461922 436 ntBASIC4.77□□□□□ -1.65
CCDC42Q96M95 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC42Q96M95 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.77□□□□□ -1.65
CCDC42Q96M95 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC42Q96M95 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC4.77□□□□□ -1.65
CCDC42Q96M95 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC42Q96M95 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.77□□□□□ -1.65
CCDC42Q96M95 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC42Q96M95 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
CCDC42Q96M95 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC42Q96M95 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 MIR1911-201ENST00000410783 80 ntBASIC4.76□□□□□ -1.65
CCDC42Q96M95 RPS20P14-201ENST00000412545 360 ntBASIC4.76□□□□□ -1.65
CCDC42Q96M95 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 YWHAZP2-201ENST00000440317 728 ntBASIC4.76□□□□□ -1.65
CCDC42Q96M95 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 RPS27AP17-201ENST00000463344 455 ntBASIC4.76□□□□□ -1.65
CCDC42Q96M95 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 AC069240.1-201ENST00000548774 375 ntBASIC4.76□□□□□ -1.65
CCDC42Q96M95 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 AC019278.1-201ENST00000623516 479 ntBASIC4.76□□□□□ -1.65
CCDC42Q96M95 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 OR2L1P-202ENST00000641567 1023 ntBASIC4.76□□□□□ -1.65
CCDC42Q96M95 AC087190.4-201ENST00000574616 8334 ntBASIC4.76□□□□□ -1.65
CCDC42Q96M95 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 AC011266.1-201ENST00000624119 3569 ntBASIC4.76□□□□□ -1.65
CCDC42Q96M95 AC245100.2-201ENST00000454544 1679 ntBASIC4.76□□□□□ -1.65
CCDC42Q96M95 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC42Q96M95 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 CASC19-255ENST00000641733 1385 ntBASIC4.76□□□□□ -1.65
CCDC42Q96M95 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC42Q96M95 SDAD1P1-202ENST00000524156 2051 ntBASIC4.76□□□□□ -1.65
CCDC42Q96M95 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
CCDC42Q96M95 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC42Q96M95 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC42Q96M95 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
CCDC42Q96M95 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.75□□□□□ -1.65
CCDC42Q96M95 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
CCDC42Q96M95 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
CCDC42Q96M95 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.75□□□□□ -1.65
CCDC42Q96M95 OR56A4-201ENST00000330728 1209 ntBASIC4.75□□□□□ -1.65
CCDC42Q96M95 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.75□□□□□ -1.65
CCDC42Q96M95 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC42Q96M95 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC42Q96M95 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms