Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC073136.2-201ENST00000417282 849 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 GLUD1P9-201ENST00000420997 1173 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 AC069285.2-201ENST00000440210 275 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 BUD31P2-201ENST00000449374 300 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 OR52J1P-201ENST00000450596 932 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 RPL7P61-201ENST00000451721 751 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 AC010469.1-201ENST00000463864 576 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 RN7SL558P-201ENST00000497468 299 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SKA3Q8IX90 NDUFB5P1-201ENST00000508134 564 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SKA3Q8IX90 RNU6-709P-201ENST00000517257 104 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 EIF4A2P3-201ENST00000525903 1055 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 AP000676.2-201ENST00000529711 301 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SKA3Q8IX90 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 GSTP1P1-201ENST00000548078 319 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 OR1F2P-201ENST00000570470 933 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 CYCSP40-201ENST00000575927 294 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 AC012414.7-202ENST00000622705 1090 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 CR381572.2-201ENST00000624852 397 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 SAMMSON-226ENST00000642089 1582 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA3Q8IX90 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA3Q8IX90 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA3Q8IX90 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
SKA3Q8IX90 DDX18P5-201ENST00000534547 1306 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SKA3Q8IX90 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
SKA3Q8IX90 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 RNA5SP372-201ENST00000390836 115 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 ST13P16-201ENST00000401760 781 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 AP000580.1-201ENST00000404439 358 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 MTND3P20-201ENST00000407663 186 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 AL512504.1-201ENST00000415494 778 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 AL356806.1-201ENST00000422524 916 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 RGS17P1-201ENST00000423358 553 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 MTCO1P57-201ENST00000432182 261 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 TRIM60P13-201ENST00000432350 1283 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 AL451139.1-201ENST00000434718 346 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 VN1R54P-201ENST00000435210 1049 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 RPL31P44-201ENST00000447680 377 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 AL121877.1-201ENST00000453704 622 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 STRADBP1-201ENST00000478954 1281 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 OR4V1P-201ENST00000525394 1140 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 RPL21P7-201ENST00000557463 483 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 AC051619.2-201ENST00000559063 397 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 AC122134.1-201ENST00000565664 1104 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 AC005229.3-201ENST00000603438 323 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 AL121932.1-201ENST00000605542 214 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 AC073111.2-201ENST00000605657 1075 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 AC087385.3-201ENST00000620477 187 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 AC055839.1-201ENST00000634467 498 ntBASIC4.24□□□□□ -1.73
SKA3Q8IX90 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
SKA3Q8IX90 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms