Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL121834.1-201ENST00000572284 509 ntBASIC5.78□□□□□ -1.48
USP39Q53GS9 AC022069.1-201ENST00000582910 658 ntBASIC5.78□□□□□ -1.48
USP39Q53GS9 CBX3P2-202ENST00000583365 535 ntBASIC5.78□□□□□ -1.48
USP39Q53GS9 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.78□□□□□ -1.48
USP39Q53GS9 AC083760.1-201ENST00000589621 670 ntBASIC5.78□□□□□ -1.48
USP39Q53GS9 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC5.78□□□□□ -1.48
USP39Q53GS9 MTCO3P22-201ENST00000603219 784 ntBASIC5.78□□□□□ -1.48
USP39Q53GS9 AL163642.2-201ENST00000604722 1019 ntBASIC5.78□□□□□ -1.48
USP39Q53GS9 AL121612.2-201ENST00000612261 482 ntBASIC5.78□□□□□ -1.48
USP39Q53GS9 RPSAP73-201ENST00000614820 330 ntBASIC5.78□□□□□ -1.48
USP39Q53GS9 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.78□□□□□ -1.48
USP39Q53GS9 AL359314.1-201ENST00000616913 261 ntBASIC5.78□□□□□ -1.48
USP39Q53GS9 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.78□□□□□ -1.48
USP39Q53GS9 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC5.78□□□□□ -1.48
USP39Q53GS9 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
USP39Q53GS9 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
USP39Q53GS9 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
USP39Q53GS9 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
USP39Q53GS9 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
USP39Q53GS9 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.78□□□□□ -1.48
USP39Q53GS9 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
USP39Q53GS9 AC092070.2-203ENST00000598377 3644 ntBASIC5.78□□□□□ -1.48
USP39Q53GS9 AL138820.1-201ENST00000617901 5305 ntBASIC5.78□□□□□ -1.48
USP39Q53GS9 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.48
USP39Q53GS9 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 SLC10A5P1-201ENST00000379063 1306 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 KYNUP3-201ENST00000574386 1341 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.77□□□□□ -1.49
USP39Q53GS9 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.77□□□□□ -1.49
USP39Q53GS9 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.77□□□□□ -1.49
USP39Q53GS9 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.77□□□□□ -1.49
USP39Q53GS9 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 RNU6-252P-201ENST00000363232 107 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 RNA5SP507-201ENST00000363603 121 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 RNA5SP131-201ENST00000365452 119 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 RNU4-2-201ENST00000365668 141 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.77□□□□□ -1.49
USP39Q53GS9 ATP5F1P3-201ENST00000397213 657 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 AL357752.1-201ENST00000412817 349 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.77□□□□□ -1.49
USP39Q53GS9 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.77□□□□□ -1.49
USP39Q53GS9 MTND4P3-201ENST00000417829 541 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC5.77□□□□□ -1.49
USP39Q53GS9 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 AL139148.1-201ENST00000427122 680 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC5.77□□□□□ -1.49
USP39Q53GS9 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC5.77□□□□□ -1.49
USP39Q53GS9 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.77□□□□□ -1.49
USP39Q53GS9 AC068135.1-201ENST00000446164 246 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC5.77□□□□□ -1.49
USP39Q53GS9 AC239798.3-201ENST00000454459 408 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 RANP1-206ENST00000455094 651 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC5.77□□□□□ -1.49
USP39Q53GS9 SYPL1P1-201ENST00000473622 768 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 RN7SL826P-201ENST00000479724 288 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 RPL7P16-201ENST00000479738 738 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 RN7SL570P-201ENST00000484405 292 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 UBA52P7-201ENST00000486088 380 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.77□□□□□ -1.49
USP39Q53GS9 AC010424.1-201ENST00000506336 297 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 AC067904.2-201ENST00000517322 1283 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 PTK2-220ENST00000520151 573 ntTSL 4 BASIC5.77□□□□□ -1.49
USP39Q53GS9 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC5.77□□□□□ -1.49
USP39Q53GS9 OR5G4P-201ENST00000525251 760 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.77□□□□□ -1.49
USP39Q53GS9 NDUFS5P6-201ENST00000529136 295 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
USP39Q53GS9 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.77□□□□□ -1.49
USP39Q53GS9 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.77□□□□□ -1.49
USP39Q53GS9 AC090695.1-201ENST00000561269 1222 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.77□□□□□ -1.49
USP39Q53GS9 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.77□□□□□ -1.49
USP39Q53GS9 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC5.77□□□□□ -1.49
USP39Q53GS9 AC063977.5-201ENST00000601044 974 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 AC131235.4-201ENST00000609288 620 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 AC073114.1-201ENST00000612027 490 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 AL355974.3-201ENST00000617383 467 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.77□□□□□ -1.49
USP39Q53GS9 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.77□□□□□ -1.49
USP39Q53GS9 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 AC125336.1-201ENST00000508893 2827 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.77□□□□□ -1.49
USP39Q53GS9 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
USP39Q53GS9 CNOT6LP1-201ENST00000559681 1462 ntBASIC5.77□□□□□ -1.49
USP39Q53GS9 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AC019072.1-201ENST00000604535 1551 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms