Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
HLA-DMBP28068 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HLA-DMBP28068 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
HLA-DMBP28068 RNA5SP191-201ENST00000362585 102 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 MIR195-201ENST00000385194 87 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 MIR708-201ENST00000390708 88 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 AL139039.2-201ENST00000407436 479 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 GLUD1P9-201ENST00000420997 1173 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC104651.2-201ENST00000447549 528 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC063943.1-201ENST00000465434 453 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 CREM-230ENST00000474931 626 ntTSL 2 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC007686.1-201ENST00000488511 463 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC104971.1-201ENST00000495117 578 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 ATP6V1G1P6-201ENST00000504007 334 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC018442.3-201ENST00000523025 183 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 BGLT3-201ENST00000564523 994 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 MIR3667-201ENST00000581025 74 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 MIR6748-201ENST00000610433 71 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HLA-DMBP28068 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC055839.1-201ENST00000634467 498 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
HLA-DMBP28068 SDAD1P1-202ENST00000524156 2051 ntBASIC3.54□□□□□ -1.84
HLA-DMBP28068 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HLA-DMBP28068 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HLA-DMBP28068 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HLA-DMBP28068 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
HLA-DMBP28068 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
HLA-DMBP28068 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HLA-DMBP28068 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HLA-DMBP28068 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HLA-DMBP28068 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 HSPD1P14-201ENST00000432666 1618 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HLA-DMBP28068 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 AC019155.1-201ENST00000382242 574 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 AC114755.2-201ENST00000413520 361 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
HLA-DMBP28068 GAPDHP49-201ENST00000421421 961 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 EIF4EP1-201ENST00000422311 642 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 USP9YP9-201ENST00000429406 715 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 OR1H1P-201ENST00000448731 937 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 AURKAPS2-201ENST00000454983 333 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 AC133473.1-201ENST00000455173 299 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 HSPE1P22-201ENST00000456856 327 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 AC016687.1-201ENST00000482574 353 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 GAPDHP56-201ENST00000506031 988 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 AC002456.2-201ENST00000509356 380 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 RNA5SP228-201ENST00000516232 133 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 MYL12AP1-201ENST00000518490 515 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 BUD31P1-201ENST00000521828 359 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 MAL2-201ENST00000522112 573 ntTSL 4 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 AC008147.3-201ENST00000548666 354 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 CR383656.6-201ENST00000550518 394 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 RPL21P7-201ENST00000557463 483 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC3.53□□□□□ -1.84
HLA-DMBP28068 OR7A19P-201ENST00000608051 733 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 AC011815.3-201ENST00000624194 473 ntBASIC3.53□□□□□ -1.84
HLA-DMBP28068 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HLA-DMBP28068 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HLA-DMBP28068 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HLA-DMBP28068 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
HLA-DMBP28068 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
HLA-DMBP28068 AL356489.2-201ENST00000566968 3528 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms