Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
USF1P22415 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
USF1P22415 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
USF1P22415 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.11□□□□□ -1.75
USF1P22415 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
USF1P22415 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
USF1P22415 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
USF1P22415 AC104118.1-201ENST00000607625 1589 ntBASIC4.1□□□□□ -1.75
USF1P22415 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.1□□□□□ -1.75
USF1P22415 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
USF1P22415 OR14L1P-202ENST00000641545 3009 ntBASIC4.1□□□□□ -1.75
USF1P22415 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
USF1P22415 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
USF1P22415 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC4.1□□□□□ -1.75
USF1P22415 UBBP2-201ENST00000376781 231 ntBASIC4.1□□□□□ -1.75
USF1P22415 RNA5SP332-201ENST00000391063 115 ntBASIC4.1□□□□□ -1.75
USF1P22415 CCL7-202ENST00000394627 696 ntTSL 3 BASIC4.1□□□□□ -1.75
USF1P22415 AL136131.1-201ENST00000406079 803 ntBASIC4.1□□□□□ -1.75
USF1P22415 MIR1271-201ENST00000408537 86 ntBASIC4.1□□□□□ -1.75
USF1P22415 RN7SKP16-201ENST00000410180 299 ntBASIC4.1□□□□□ -1.75
USF1P22415 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.1□□□□□ -1.75
USF1P22415 ARAFP1-201ENST00000422172 605 ntBASIC4.1□□□□□ -1.75
USF1P22415 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.1□□□□□ -1.75
USF1P22415 CNOT7P1-201ENST00000429006 852 ntBASIC4.1□□□□□ -1.75
USF1P22415 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.1□□□□□ -1.75
USF1P22415 HMGB3P9-201ENST00000441799 583 ntBASIC4.1□□□□□ -1.75
USF1P22415 TXNP2-201ENST00000443918 295 ntBASIC4.1□□□□□ -1.75
USF1P22415 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.1□□□□□ -1.75
USF1P22415 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.1□□□□□ -1.75
USF1P22415 AC093166.2-201ENST00000455969 1017 ntBASIC4.1□□□□□ -1.75
USF1P22415 AL591473.1-201ENST00000464297 313 ntBASIC4.1□□□□□ -1.75
USF1P22415 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.1□□□□□ -1.75
USF1P22415 AC111000.3-201ENST00000508057 576 ntBASIC4.1□□□□□ -1.75
USF1P22415 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USF1P22415 AC034205.1-201ENST00000520621 638 ntBASIC4.1□□□□□ -1.75
USF1P22415 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.1□□□□□ -1.75
USF1P22415 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.1□□□□□ -1.75
USF1P22415 AL512310.9-201ENST00000553311 948 ntBASIC4.1□□□□□ -1.75
USF1P22415 AGGF1P9-201ENST00000561884 913 ntBASIC4.1□□□□□ -1.75
USF1P22415 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.1□□□□□ -1.75
USF1P22415 ADAM3B-201ENST00000569937 840 ntBASIC4.1□□□□□ -1.75
USF1P22415 GMCL1P2-201ENST00000605230 823 ntBASIC4.1□□□□□ -1.75
USF1P22415 MIR6853-201ENST00000619642 74 ntBASIC4.1□□□□□ -1.75
USF1P22415 AC015871.5-202ENST00000623252 701 ntBASIC4.1□□□□□ -1.75
USF1P22415 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.1□□□□□ -1.75
USF1P22415 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.1□□□□□ -1.75
USF1P22415 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
USF1P22415 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USF1P22415 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
USF1P22415 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
USF1P22415 AC126323.6-202ENST00000568092 3511 ntBASIC4.1□□□□□ -1.75
USF1P22415 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
USF1P22415 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USF1P22415 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.09□□□□□ -1.75
USF1P22415 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.09□□□□□ -1.75
USF1P22415 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.09□□□□□ -1.75
USF1P22415 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
USF1P22415 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.09□□□□□ -1.75
USF1P22415 AL121950.1-201ENST00000624993 2077 ntBASIC4.09□□□□□ -1.75
USF1P22415 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.09□□□□□ -1.75
USF1P22415 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.09□□□□□ -1.75
USF1P22415 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USF1P22415 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
USF1P22415 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USF1P22415 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
USF1P22415 OR52B1P-201ENST00000316506 909 ntBASIC4.09□□□□□ -1.75
USF1P22415 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USF1P22415 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USF1P22415 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.09□□□□□ -1.75
USF1P22415 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
USF1P22415 AL359643.1-201ENST00000404109 423 ntBASIC4.09□□□□□ -1.75
USF1P22415 AL356967.1-201ENST00000406305 431 ntBASIC4.09□□□□□ -1.75
USF1P22415 U3.32-201ENST00000408116 212 ntBASIC4.09□□□□□ -1.75
USF1P22415 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USF1P22415 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USF1P22415 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.09□□□□□ -1.75
USF1P22415 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.09□□□□□ -1.75
USF1P22415 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.09□□□□□ -1.75
USF1P22415 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.09□□□□□ -1.75
USF1P22415 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.09□□□□□ -1.75
USF1P22415 AC005154.2-201ENST00000438110 379 ntBASIC4.09□□□□□ -1.75
USF1P22415 CYCSP42-201ENST00000450823 238 ntBASIC4.09□□□□□ -1.75
USF1P22415 AC010733.1-201ENST00000451515 401 ntBASIC4.09□□□□□ -1.75
USF1P22415 HMGB1P4-201ENST00000455362 567 ntBASIC4.09□□□□□ -1.75
USF1P22415 RPS5P7-201ENST00000456664 608 ntBASIC4.09□□□□□ -1.75
USF1P22415 AC037198.2-201ENST00000478845 733 ntBASIC4.09□□□□□ -1.75
USF1P22415 AC068587.1-201ENST00000483613 781 ntBASIC4.09□□□□□ -1.75
USF1P22415 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC4.09□□□□□ -1.75
USF1P22415 AK3P4-201ENST00000504283 583 ntBASIC4.09□□□□□ -1.75
USF1P22415 HMGB3P16-201ENST00000508037 287 ntBASIC4.09□□□□□ -1.75
USF1P22415 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USF1P22415 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.09□□□□□ -1.75
USF1P22415 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.09□□□□□ -1.75
USF1P22415 AC009643.1-201ENST00000532030 391 ntBASIC4.09□□□□□ -1.75
USF1P22415 SULT1C2P2-201ENST00000562517 294 ntBASIC4.09□□□□□ -1.75
USF1P22415 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.09□□□□□ -1.75
USF1P22415 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.09□□□□□ -1.75
USF1P22415 AC233280.2-201ENST00000603917 1070 ntBASIC4.09□□□□□ -1.75
USF1P22415 AC007620.3-201ENST00000608131 497 ntBASIC4.09□□□□□ -1.75
USF1P22415 AC022106.2-201ENST00000620114 757 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms