Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXC4P09017 EIF2S2P2-201ENST00000447161 982 ntBASIC4.52□□□□□ -1.69
HOXC4P09017 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.52□□□□□ -1.69
HOXC4P09017 RN7SL860P-201ENST00000473738 223 ntBASIC4.52□□□□□ -1.69
HOXC4P09017 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXC4P09017 TRIM36-IT1-201ENST00000503723 881 ntBASIC4.52□□□□□ -1.69
HOXC4P09017 HMGB3P16-201ENST00000508037 287 ntBASIC4.52□□□□□ -1.69
HOXC4P09017 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXC4P09017 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXC4P09017 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXC4P09017 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXC4P09017 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXC4P09017 MIR378J-201ENST00000611988 109 ntBASIC4.52□□□□□ -1.69
HOXC4P09017 AP001005.3-201ENST00000622049 129 ntBASIC4.52□□□□□ -1.69
HOXC4P09017 AC015871.5-202ENST00000623252 701 ntBASIC4.52□□□□□ -1.69
HOXC4P09017 AC138627.1-204ENST00000641894 765 ntBASIC4.52□□□□□ -1.69
HOXC4P09017 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
HOXC4P09017 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXC4P09017 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
HOXC4P09017 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXC4P09017 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.52□□□□□ -1.69
HOXC4P09017 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 AC139713.2-214ENST00000642059 1811 ntBASIC4.51□□□□□ -1.69
HOXC4P09017 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
HOXC4P09017 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXC4P09017 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXC4P09017 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXC4P09017 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 RNU4-39P-201ENST00000362455 127 ntBASIC4.51□□□□□ -1.69
HOXC4P09017 SNORA62-201ENST00000365493 153 ntBASIC4.51□□□□□ -1.69
HOXC4P09017 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXC4P09017 AL672167.2-201ENST00000377164 879 ntBASIC4.51□□□□□ -1.69
HOXC4P09017 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXC4P09017 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXC4P09017 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXC4P09017 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXC4P09017 AL935212.3-201ENST00000450729 284 ntBASIC4.51□□□□□ -1.69
HOXC4P09017 NDUFA5P9-201ENST00000472609 340 ntBASIC4.51□□□□□ -1.69
HOXC4P09017 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXC4P09017 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXC4P09017 AC068831.4-201ENST00000556118 109 ntBASIC4.51□□□□□ -1.69
HOXC4P09017 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXC4P09017 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 RN7SL435P-201ENST00000584418 282 ntBASIC4.51□□□□□ -1.69
HOXC4P09017 ELOCP28-201ENST00000590044 317 ntBASIC4.51□□□□□ -1.69
HOXC4P09017 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXC4P09017 AC012409.3-201ENST00000611343 981 ntBASIC4.51□□□□□ -1.69
HOXC4P09017 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXC4P09017 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXC4P09017 MIR6810-201ENST00000622701 70 ntBASIC4.51□□□□□ -1.69
HOXC4P09017 RFC1-217ENST00000639695 867 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXC4P09017 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
HOXC4P09017 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
HOXC4P09017 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
HOXC4P09017 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC4P09017 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXC4P09017 AL391684.1-202ENST00000641293 1636 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.5□□□□□ -1.69
HOXC4P09017 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXC4P09017 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
HOXC4P09017 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
HOXC4P09017 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
HOXC4P09017 RPS24P12-201ENST00000402084 394 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 AL080315.1-201ENST00000406055 466 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 RAB28P1-201ENST00000411517 641 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 CYCSP10-201ENST00000417973 294 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 RPL12P34-201ENST00000424532 479 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 AL732292.1-201ENST00000426692 226 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXC4P09017 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXC4P09017 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXC4P09017 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXC4P09017 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXC4P09017 BLNK-209ENST00000495266 440 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXC4P09017 AC025674.1-201ENST00000507074 324 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXC4P09017 RNA5SP303-201ENST00000516192 130 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 EIF4EP5-201ENST00000528228 640 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXC4P09017 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXC4P09017 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXC4P09017 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXC4P09017 MIR4277-201ENST00000578298 84 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 AC023762.1-201ENST00000603280 584 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXC4P09017 AC006840.1-201ENST00000623069 542 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 AL359757.1-201ENST00000623176 255 ntBASIC4.5□□□□□ -1.69
HOXC4P09017 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms