Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.53□□□□□ -1.68
LMX1BO60663 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.53□□□□□ -1.68
LMX1BO60663 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.53□□□□□ -1.68
LMX1BO60663 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.53□□□□□ -1.68
LMX1BO60663 AP000916.1-201ENST00000533869 835 ntBASIC4.53□□□□□ -1.68
LMX1BO60663 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.53□□□□□ -1.68
LMX1BO60663 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC4.53□□□□□ -1.68
LMX1BO60663 RPL10P14-201ENST00000565265 298 ntBASIC4.53□□□□□ -1.68
LMX1BO60663 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.53□□□□□ -1.68
LMX1BO60663 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.53□□□□□ -1.68
LMX1BO60663 AC009597.2-201ENST00000604659 592 ntBASIC4.53□□□□□ -1.68
LMX1BO60663 AC064807.4-201ENST00000607201 407 ntBASIC4.53□□□□□ -1.68
LMX1BO60663 AC092954.1-201ENST00000609121 445 ntBASIC4.53□□□□□ -1.68
LMX1BO60663 AC100847.1-201ENST00000611316 481 ntBASIC4.53□□□□□ -1.68
LMX1BO60663 AC015922.4-201ENST00000612568 690 ntBASIC4.53□□□□□ -1.68
LMX1BO60663 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.53□□□□□ -1.68
LMX1BO60663 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC4.53□□□□□ -1.68
LMX1BO60663 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.53□□□□□ -1.68
LMX1BO60663 AP003399.1-201ENST00000637534 361 ntBASIC4.53□□□□□ -1.68
LMX1BO60663 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LMX1BO60663 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LMX1BO60663 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
LMX1BO60663 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.53□□□□□ -1.68
LMX1BO60663 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LMX1BO60663 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LMX1BO60663 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
LMX1BO60663 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LMX1BO60663 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
LMX1BO60663 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LMX1BO60663 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
LMX1BO60663 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LMX1BO60663 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.53□□□□□ -1.68
LMX1BO60663 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
LMX1BO60663 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.53□□□□□ -1.68
LMX1BO60663 AL731532.2-201ENST00000623542 1953 ntBASIC4.53□□□□□ -1.68
LMX1BO60663 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.69
LMX1BO60663 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC4.53□□□□□ -1.69
LMX1BO60663 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.53□□□□□ -1.69
LMX1BO60663 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.53□□□□□ -1.69
LMX1BO60663 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LMX1BO60663 AC006210.2-201ENST00000367074 1545 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
LMX1BO60663 NF1-214ENST00000490416 1329 ntTSL 3 BASIC4.52□□□□□ -1.69
LMX1BO60663 AC008432.1-201ENST00000615912 1320 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.52□□□□□ -1.69
LMX1BO60663 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LMX1BO60663 AC003985.2-201ENST00000562268 1669 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
LMX1BO60663 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LMX1BO60663 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LMX1BO60663 RNU1-149P-201ENST00000390870 161 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 TAF9BP2-201ENST00000400856 499 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 DUTP5-201ENST00000406790 469 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 U3.32-201ENST00000408116 212 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 U3.36-201ENST00000408418 213 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.52□□□□□ -1.69
LMX1BO60663 UBE2V1P9-201ENST00000414760 368 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.52□□□□□ -1.69
LMX1BO60663 XIST-201ENST00000416330 750 ntTSL 2 BASIC4.52□□□□□ -1.69
LMX1BO60663 AL365338.1-201ENST00000422282 858 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 AC093655.2-201ENST00000425735 631 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 PSMD10P3-201ENST00000437000 448 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.52□□□□□ -1.69
LMX1BO60663 RPL7AP61-201ENST00000443410 636 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 Z80107.2-201ENST00000445127 392 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC4.52□□□□□ -1.69
LMX1BO60663 Z73417.1-201ENST00000447373 778 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC4.52□□□□□ -1.69
LMX1BO60663 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.52□□□□□ -1.69
LMX1BO60663 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.52□□□□□ -1.69
LMX1BO60663 SUMO2P4-201ENST00000504193 276 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.52□□□□□ -1.69
LMX1BO60663 SNORA70.11-201ENST00000515987 138 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 RNU6-1334P-201ENST00000516032 105 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 SNORA70.13-201ENST00000516116 138 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 RNU6-311P-201ENST00000516224 102 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.52□□□□□ -1.69
LMX1BO60663 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.52□□□□□ -1.69
LMX1BO60663 MRPS36P3-201ENST00000519284 130 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.52□□□□□ -1.69
LMX1BO60663 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
LMX1BO60663 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LMX1BO60663 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC4.52□□□□□ -1.69
LMX1BO60663 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC4.52□□□□□ -1.69
LMX1BO60663 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC4.52□□□□□ -1.69
LMX1BO60663 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.52□□□□□ -1.69
LMX1BO60663 SNX6P1-201ENST00000601728 1224 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC4.52□□□□□ -1.69
LMX1BO60663 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.52□□□□□ -1.69
LMX1BO60663 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.52□□□□□ -1.69
LMX1BO60663 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.52□□□□□ -1.69
LMX1BO60663 AL035461.2-201ENST00000619201 524 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.52□□□□□ -1.69
LMX1BO60663 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.52□□□□□ -1.69
LMX1BO60663 AC068137.4-201ENST00000638485 296 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LMX1BO60663 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LMX1BO60663 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LMX1BO60663 AL022322.2-201ENST00000624072 20397 ntBASIC4.52□□□□□ -1.69
LMX1BO60663 AL359715.4-201ENST00000606629 1436 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms