Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 CALM3-202ENST00000391918 702 ntTSL 2 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 AC111152.3-201ENST00000569699 673 ntBASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 AC121338.2-201ENST00000622535 1744 ntBASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 AC006128.1-201ENST00000624704 1661 ntBASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CSPG4Q6UVK1 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 CR769767.2-201ENST00000622735 460 ntBASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 AL512604.3-201ENST00000569583 964 ntBASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 MIR3180-1-201ENST00000580374 94 ntBASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 MIR3180-3-201ENST00000584616 94 ntBASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CSPG4Q6UVK1 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 CKBP1-201ENST00000565489 1086 ntBASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 AC012676.1-201ENST00000574705 1949 ntBASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 AC012313.10-201ENST00000623509 926 ntBASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CSPG4Q6UVK1 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.04■□□□□ 0.16
CSPG4Q6UVK1 HLA-A-209ENST00000638375 975 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms