Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 KRT8P26-201ENST00000534154 1276 ntBASIC10.72□□□□□ -0.69
UBR4Q5T4S7 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 AC015922.1-201ENST00000421102 1152 ntBASIC10.72□□□□□ -0.69
UBR4Q5T4S7 KRT18P3-201ENST00000451602 1288 ntBASIC10.72□□□□□ -0.69
UBR4Q5T4S7 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
UBR4Q5T4S7 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 AC139887.3-201ENST00000568585 713 ntBASIC10.71□□□□□ -0.69
UBR4Q5T4S7 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 FICD-205ENST00000552758 603 ntTSL 2 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 RETN-203ENST00000629642 400 ntTSL 5 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 CCNC-219ENST00000627680 896 ntTSL 5 BASIC10.71□□□□□ -0.69
UBR4Q5T4S7 FAM215A-202ENST00000632077 792 ntBASIC10.71□□□□□ -0.69
UBR4Q5T4S7 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
UBR4Q5T4S7 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
UBR4Q5T4S7 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
UBR4Q5T4S7 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
UBR4Q5T4S7 DRAXINP1-201ENST00000437611 948 ntBASIC10.71□□□□□ -0.7
UBR4Q5T4S7 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC10.71□□□□□ -0.7
UBR4Q5T4S7 AL359881.2-201ENST00000602973 570 ntBASIC10.71□□□□□ -0.7
UBR4Q5T4S7 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC10.71□□□□□ -0.7
UBR4Q5T4S7 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
UBR4Q5T4S7 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC10.71□□□□□ -0.7
UBR4Q5T4S7 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
UBR4Q5T4S7 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
UBR4Q5T4S7 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
UBR4Q5T4S7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 AC116351.2-201ENST00000606540 1585 ntBASIC10.7□□□□□ -0.7
UBR4Q5T4S7 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 SCARNA2-201ENST00000458748 420 ntBASIC10.7□□□□□ -0.7
UBR4Q5T4S7 AL356488.2-201ENST00000602755 427 ntBASIC10.7□□□□□ -0.7
UBR4Q5T4S7 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 AC092902.6-201ENST00000641783 218 ntBASIC10.7□□□□□ -0.7
UBR4Q5T4S7 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 INO80C-206ENST00000586489 594 ntTSL 3 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
UBR4Q5T4S7 AF186996.4-201ENST00000467186 377 ntBASIC10.7□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms