Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLRN1P58418 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLRN1P58418 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.39■□□□□ 0.37
CLRN1P58418 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.39■□□□□ 0.37
CLRN1P58418 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.39■□□□□ 0.37
CLRN1P58418 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.39■□□□□ 0.37
CLRN1P58418 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLRN1P58418 AL121829.2-201ENST00000620908 328 ntBASIC17.39■□□□□ 0.37
CLRN1P58418 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLRN1P58418 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLRN1P58418 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLRN1P58418 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLRN1P58418 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLRN1P58418 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.39■□□□□ 0.37
CLRN1P58418 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.39■□□□□ 0.37
CLRN1P58418 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CLRN1P58418 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.39■□□□□ 0.37
CLRN1P58418 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLRN1P58418 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CLRN1P58418 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN1P58418 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN1P58418 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CLRN1P58418 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLRN1P58418 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN1P58418 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN1P58418 POM121L13P-201ENST00000422362 380 ntBASIC17.38■□□□□ 0.37
CLRN1P58418 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.38■□□□□ 0.37
CLRN1P58418 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.38■□□□□ 0.37
CLRN1P58418 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN1P58418 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN1P58418 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.38■□□□□ 0.37
CLRN1P58418 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLRN1P58418 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.38■□□□□ 0.37
CLRN1P58418 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN1P58418 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.38■□□□□ 0.37
CLRN1P58418 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN1P58418 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN1P58418 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN1P58418 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.38■□□□□ 0.37
CLRN1P58418 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN1P58418 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN1P58418 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CLRN1P58418 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.37■□□□□ 0.37
CLRN1P58418 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN1P58418 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
CLRN1P58418 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.37■□□□□ 0.37
CLRN1P58418 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN1P58418 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN1P58418 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN1P58418 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN1P58418 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CLRN1P58418 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CLRN1P58418 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.37■□□□□ 0.37
CLRN1P58418 YBX1P10-201ENST00000444752 975 ntBASIC17.37■□□□□ 0.37
CLRN1P58418 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.37■□□□□ 0.37
CLRN1P58418 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.37■□□□□ 0.37
CLRN1P58418 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.37■□□□□ 0.37
CLRN1P58418 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.37■□□□□ 0.37
CLRN1P58418 PRKY-204ENST00000533551 1019 ntBASIC17.37■□□□□ 0.37
CLRN1P58418 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.37■□□□□ 0.37
CLRN1P58418 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.37■□□□□ 0.37
CLRN1P58418 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN1P58418 AC093484.2-201ENST00000580996 2166 ntBASIC17.37■□□□□ 0.37
CLRN1P58418 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.37■□□□□ 0.37
CLRN1P58418 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
CLRN1P58418 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN1P58418 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.37■□□□□ 0.37
CLRN1P58418 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
CLRN1P58418 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CLRN1P58418 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
CLRN1P58418 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CLRN1P58418 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN1P58418 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN1P58418 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CLRN1P58418 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN1P58418 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.36■□□□□ 0.37
CLRN1P58418 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN1P58418 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN1P58418 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN1P58418 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN1P58418 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.36■□□□□ 0.37
CLRN1P58418 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.36■□□□□ 0.37
CLRN1P58418 AP003097.1-201ENST00000530657 1135 ntBASIC17.36■□□□□ 0.37
CLRN1P58418 KRT18P6-201ENST00000555540 1265 ntBASIC17.36■□□□□ 0.37
CLRN1P58418 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.36■□□□□ 0.37
CLRN1P58418 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.36■□□□□ 0.37
CLRN1P58418 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN1P58418 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN1P58418 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CLRN1P58418 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN1P58418 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN1P58418 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.36■□□□□ 0.37
CLRN1P58418 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN1P58418 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CLRN1P58418 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
CLRN1P58418 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLRN1P58418 AC007952.6-201ENST00000573168 2673 ntBASIC17.35■□□□□ 0.37
CLRN1P58418 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CLRN1P58418 AC003957.1-201ENST00000625108 2673 ntBASIC17.35■□□□□ 0.37
CLRN1P58418 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms