Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC011498.5-201ENST00000592027 486 ntBASIC22.6■■□□□ 1.21
CTCFP49711 AL121912.1-201ENST00000603683 238 ntBASIC22.6■■□□□ 1.21
CTCFP49711 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
CTCFP49711 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CTCFP49711 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
CTCFP49711 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC22.6■■□□□ 1.21
CTCFP49711 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC22.6■■□□□ 1.21
CTCFP49711 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CTCFP49711 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CTCFP49711 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC22.59■■□□□ 1.21
CTCFP49711 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CTCFP49711 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
CTCFP49711 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CTCFP49711 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CTCFP49711 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CTCFP49711 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC22.59■■□□□ 1.21
CTCFP49711 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC22.59■■□□□ 1.21
CTCFP49711 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC22.59■■□□□ 1.21
CTCFP49711 SPDYE15P-201ENST00000424157 909 ntBASIC22.59■■□□□ 1.21
CTCFP49711 BMF-207ENST00000559701 630 ntTSL 3 BASIC22.59■■□□□ 1.21
CTCFP49711 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC22.59■■□□□ 1.21
CTCFP49711 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC22.59■■□□□ 1.21
CTCFP49711 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC22.59■■□□□ 1.21
CTCFP49711 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CTCFP49711 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CTCFP49711 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CTCFP49711 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.58■■□□□ 1.21
CTCFP49711 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CTCFP49711 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CTCFP49711 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CTCFP49711 HBZP1-201ENST00000354915 429 ntBASIC22.58■■□□□ 1.21
CTCFP49711 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CTCFP49711 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC22.58■■□□□ 1.21
CTCFP49711 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC22.58■■□□□ 1.21
CTCFP49711 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC22.58■■□□□ 1.21
CTCFP49711 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC22.58■■□□□ 1.21
CTCFP49711 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC22.58■■□□□ 1.21
CTCFP49711 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.21
CTCFP49711 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC22.58■■□□□ 1.21
CTCFP49711 KRT18P58-201ENST00000527480 1120 ntBASIC22.58■■□□□ 1.21
CTCFP49711 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC22.58■■□□□ 1.21
CTCFP49711 NEK4P2-201ENST00000580004 1012 ntBASIC22.58■■□□□ 1.21
CTCFP49711 IL11-204ENST00000590625 1028 ntTSL 2 BASIC22.58■■□□□ 1.21
CTCFP49711 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
CTCFP49711 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC22.58■■□□□ 1.21
CTCFP49711 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.2
CTCFP49711 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
CTCFP49711 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC22.58■■□□□ 1.2
CTCFP49711 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
CTCFP49711 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC22.57■■□□□ 1.2
CTCFP49711 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CTCFP49711 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC22.57■■□□□ 1.2
CTCFP49711 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CTCFP49711 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CTCFP49711 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC22.57■■□□□ 1.2
CTCFP49711 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
CTCFP49711 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CTCFP49711 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC22.57■■□□□ 1.2
CTCFP49711 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CTCFP49711 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC22.57■■□□□ 1.2
CTCFP49711 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CTCFP49711 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CTCFP49711 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CTCFP49711 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CTCFP49711 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC22.57■■□□□ 1.2
CTCFP49711 SLC25A24-204ENST00000569674 2357 ntBASIC22.57■■□□□ 1.2
CTCFP49711 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC22.57■■□□□ 1.2
CTCFP49711 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC22.57■■□□□ 1.2
CTCFP49711 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
CTCFP49711 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
CTCFP49711 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
CTCFP49711 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
CTCFP49711 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CTCFP49711 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
CTCFP49711 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
CTCFP49711 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CTCFP49711 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC22.56■■□□□ 1.2
CTCFP49711 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC22.56■■□□□ 1.2
CTCFP49711 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CTCFP49711 TUBB8P6-201ENST00000436895 1288 ntBASIC22.56■■□□□ 1.2
CTCFP49711 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC22.56■■□□□ 1.2
CTCFP49711 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CTCFP49711 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CTCFP49711 AP003041.3-201ENST00000527151 707 ntBASIC22.56■■□□□ 1.2
CTCFP49711 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC22.56■■□□□ 1.2
CTCFP49711 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC22.56■■□□□ 1.2
CTCFP49711 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC22.56■■□□□ 1.2
CTCFP49711 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC22.56■■□□□ 1.2
CTCFP49711 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CTCFP49711 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC22.56■■□□□ 1.2
CTCFP49711 STK25-204ENST00000405585 1643 ntTSL 2 BASIC22.56■■□□□ 1.2
CTCFP49711 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
CTCFP49711 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
CTCFP49711 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CTCFP49711 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC22.56■■□□□ 1.2
CTCFP49711 EXOC3-AS1-202ENST00000623673 1663 ntBASIC22.55■■□□□ 1.2
CTCFP49711 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
CTCFP49711 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
CTCFP49711 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC22.55■■□□□ 1.2
CTCFP49711 KRT18P31-201ENST00000506277 1292 ntBASIC22.55■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms