Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDHGA3Q9Y5H0 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA3Q9Y5H0 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA3Q9Y5H0 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA3Q9Y5H0 Z99496.1-201ENST00000469424 1477 ntBASIC5.7□□□□□ -1.5
PCDHGA3Q9Y5H0 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA3Q9Y5H0 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
PCDHGA3Q9Y5H0 AC096921.2-201ENST00000561507 1916 ntBASIC5.7□□□□□ -1.5
PCDHGA3Q9Y5H0 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDHGA3Q9Y5H0 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHGA3Q9Y5H0 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AL022311.1-201ENST00000623726 19416 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 Y_RNA.169-201ENST00000363745 96 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 Y_RNA.192-201ENST00000363977 102 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 RNU6-157P-201ENST00000383957 107 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AL391361.1-201ENST00000405580 489 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 OR3A2-201ENST00000408891 1076 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AK4P4-201ENST00000419465 646 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 PAICSP7-201ENST00000419829 962 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC090960.1-201ENST00000421072 306 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 BX510359.3-201ENST00000422168 306 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 RPL21P43-201ENST00000425440 472 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 VTI1BP4-201ENST00000427516 527 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 RPS27AP15-201ENST00000447672 466 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AL034418.1-201ENST00000448675 860 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AL133217.1-201ENST00000450980 425 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 RPS26P39-201ENST00000469206 341 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 RPF2P2-201ENST00000504693 896 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC109445.1-201ENST00000512356 383 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC136777.2-201ENST00000522979 358 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 MTCYBP27-201ENST00000555160 670 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC006530.1-201ENST00000555980 571 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC068714.1-201ENST00000559623 800 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AL132657.2-201ENST00000564417 358 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 VN1R82P-201ENST00000601481 356 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AL353778.1-201ENST00000603149 408 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AL589674.2-201ENST00000604304 337 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC064807.4-201ENST00000607201 407 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC023813.4-201ENST00000607580 580 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AL021707.7-201ENST00000607991 416 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 Z95327.3-201ENST00000610385 572 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 MIR4278-201ENST00000636094 69 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AP001541.1-201ENST00000623322 1904 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 AC092162.3-201ENST00000624511 1624 ntBASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDHGA3Q9Y5H0 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 RNA5SP375-201ENST00000362975 119 ntBASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 RNA5SP500-201ENST00000364486 119 ntBASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 RNU2-65P-201ENST00000410162 185 ntBASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 MTND4P22-201ENST00000413116 1169 ntBASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 AC234782.4-201ENST00000417646 1048 ntBASIC5.68□□□□□ -1.5
PCDHGA3Q9Y5H0 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms