Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 RNA5SP22-201ENST00000365393 109 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 AL672167.2-201ENST00000377164 879 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 SEPT7P2-202ENST00000398921 823 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 AL078604.1-201ENST00000404609 466 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 PDSS1P1-201ENST00000422953 1114 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 CENPIP1-201ENST00000425713 902 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 CDY14P-201ENST00000431260 1014 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 RPL12P3-201ENST00000440080 396 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 CDY12P-201ENST00000440679 1015 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 CDY13P-201ENST00000445813 1015 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 RPS27AP15-201ENST00000447672 466 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 NPM1P39-201ENST00000449818 867 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 CDY23P-201ENST00000451661 1014 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 PSMC1P13-201ENST00000458195 985 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 NIP7P2-201ENST00000485801 544 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 AC008897.1-201ENST00000494006 347 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 NDUFA5P12-201ENST00000503796 343 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 AC008147.3-201ENST00000548666 354 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 MIR4436B2-201ENST00000581415 91 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 MIR4436B1-201ENST00000583272 91 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 QTRT1P1-201ENST00000604344 1078 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 AC010201.1-201ENST00000605051 540 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 AC091979.2-201ENST00000607514 214 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
VPS29Q9UBQ0 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 Z95327.2-201ENST00000414579 1873 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AL513548.1-201ENST00000562904 1724 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 RNA5SP307-201ENST00000362863 116 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 RNA5SP397-201ENST00000391323 118 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 RN7SKP106-201ENST00000410832 272 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 NPM1P48-201ENST00000436002 853 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AL645937.3-201ENST00000453647 936 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 DDX39BP2-208ENST00000453923 258 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 RNA5SP497-201ENST00000516081 97 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AL137072.1-201ENST00000603444 466 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 HCFC2P1-201ENST00000392864 1592 ntBASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS29Q9UBQ0 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS29Q9UBQ0 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS29Q9UBQ0 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS29Q9UBQ0 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.29□□□□□ -1.72
VPS29Q9UBQ0 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS29Q9UBQ0 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS29Q9UBQ0 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.29□□□□□ -1.72
VPS29Q9UBQ0 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms