Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RPL23P2-201ENST00000320371 421 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AL121886.1-201ENST00000358609 435 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 RNU1-59P-201ENST00000364829 162 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 MIR137-201ENST00000385223 102 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AL133388.1-201ENST00000404509 287 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 RN7SKP213-201ENST00000410746 298 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AL365396.1-201ENST00000430854 671 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 CDY14P-201ENST00000431260 1014 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 HMGB1P45-201ENST00000435986 653 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC234064.1-201ENST00000436312 247 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC073143.1-201ENST00000436316 395 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 CDY12P-201ENST00000440679 1015 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 CDY13P-201ENST00000445813 1015 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AL161722.1-201ENST00000446972 1032 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC007327.1-201ENST00000447461 264 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 CDY23P-201ENST00000451661 1014 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 RPSAP50-201ENST00000481955 852 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 PDCL3P4-201ENST00000489621 720 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC084024.2-201ENST00000503480 791 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC111193.1-201ENST00000504097 155 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 MTND6P2-201ENST00000512226 524 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 FABP5P12-201ENST00000515543 389 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 RN7SKP67-201ENST00000515905 235 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC124293.1-201ENST00000530034 493 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AADACP1-206ENST00000561502 1193 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 BNIP3P4-201ENST00000604946 565 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC090525.3-201ENST00000605601 189 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC018638.7-201ENST00000605836 1114 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AL450489.1-201ENST00000612071 468 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AL352984.2-202ENST00000613699 155 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 U1.25-201ENST00000614085 162 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC009090.3-201ENST00000616553 565 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 U1.31-201ENST00000620022 160 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC068870.1-201ENST00000563737 2455 ntBASIC5.68□□□□□ -1.5
TDP1Q9NUW8 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
TDP1Q9NUW8 AC093311.1-201ENST00000506586 2021 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC100871.1-201ENST00000507871 1456 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 U3.2-201ENST00000362981 210 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 U8.4-201ENST00000363626 134 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 snoZ40.1-201ENST00000364540 72 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 RNU6-729P-201ENST00000384399 107 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 MIR765-201ENST00000390226 114 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 RPS26P38-201ENST00000414476 348 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 OR5AW1P-201ENST00000426334 1006 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 RPS11P7-201ENST00000442125 465 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TDP1Q9NUW8 RPL31P44-201ENST00000447680 377 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 RSL24D1P3-201ENST00000449255 495 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AC104978.1-201ENST00000449387 391 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 AL672138.1-201ENST00000450604 1015 ntBASIC5.67□□□□□ -1.5
TDP1Q9NUW8 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms