Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 HMGB1P46-201ENST00000520062 610 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC006349.1-201ENST00000555526 235 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 MIR4697-201ENST00000582977 78 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC005242.1-201ENST00000585658 438 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC084824.5-201ENST00000612009 413 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AL645927.2-201ENST00000618350 349 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AL731566.2-201ENST00000618971 317 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 RNU6-368P-201ENST00000620928 107 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC019206.1-201ENST00000621938 425 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 RNU6-538P-201ENST00000622329 107 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC073869.10-201ENST00000642016 354 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 TRIM51GP-201ENST00000534741 1350 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 RN7SKP100-201ENST00000411258 284 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 HYALP1-201ENST00000417674 1279 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 AC092570.3-201ENST00000420113 693 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 MORF4L1P7-201ENST00000426038 703 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 DNAJC19P7-201ENST00000428811 344 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 RPS29P9-201ENST00000440360 171 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 AC006326.1-201ENST00000445465 787 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 SLC25A18P1-201ENST00000449385 454 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 NDUFA5P9-201ENST00000472609 340 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 SNORA76.2-201ENST00000517095 137 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 AC027369.5-201ENST00000533838 755 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 AL358913.1-201ENST00000554342 121 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 TVP23CP2-201ENST00000571473 623 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 AC209154.1-201ENST00000582156 337 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 SNX6P1-201ENST00000601728 1224 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 AC068790.4-201ENST00000602474 263 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 AL450270.1-201ENST00000606160 391 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 AC016542.1-201ENST00000608259 493 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 AC138965.3-201ENST00000623875 498 ntBASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC3Q9BQI4 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC002525.1-201ENST00000624392 1622 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AC109446.4-201ENST00000623235 2755 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 SOCS5P3-201ENST00000425115 1576 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 RNA5SP187-201ENST00000384400 119 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 RNU6-1263P-201ENST00000384601 106 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 ATP5HP3-201ENST00000396994 486 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 MIR298-201ENST00000401212 88 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 FABP12P1-201ENST00000401911 322 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 GTF2IP5-201ENST00000414608 731 ntBASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC3Q9BQI4 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms