Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 NRBF2P3-201ENST00000432731 865 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC008072.1-201ENST00000434254 824 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC093716.1-201ENST00000435923 377 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 EIF2S2P5-201ENST00000457635 968 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 RNU6-775P-201ENST00000459318 96 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC083982.1-201ENST00000485679 344 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC138938.1-201ENST00000515431 782 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 RNU1-6P-201ENST00000516290 144 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 IGKV1-32-201ENST00000519290 311 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC134698.5-201ENST00000519444 336 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC125612.1-201ENST00000547580 377 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 DYNLL1P4-201ENST00000549314 266 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC087888.1-201ENST00000550884 1254 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 FAM27B-201ENST00000610601 213 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC015914.2-201ENST00000618167 288 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC012414.7-202ENST00000622705 1090 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 AP001784.1-201ENST00000624107 428 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 AC007382.1-201ENST00000624376 2618 ntBASIC4.77□□□□□ -1.65
VPS35Q96QK1 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
VPS35Q96QK1 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS35Q96QK1 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 DHX9P1-201ENST00000436565 3076 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 MAPK10-263ENST00000641052 4307 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 DDX18P5-201ENST00000534547 1306 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS35Q96QK1 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 RN7SKP224-201ENST00000364140 325 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 U3.35-201ENST00000408405 208 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 BX510359.2-201ENST00000417920 305 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 RBMY2KP-201ENST00000418221 992 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 OR2AH1P-201ENST00000425717 928 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 RPL35AP28-201ENST00000459730 331 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 AC104629.2-201ENST00000468627 598 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 AC105233.1-201ENST00000498840 781 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 HMGB3P16-201ENST00000508037 287 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 AC104997.1-201ENST00000519761 717 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 OR7E10P-201ENST00000526420 991 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
VPS35Q96QK1 AC091042.1-201ENST00000579213 173 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 AC022387.2-201ENST00000604050 448 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS35Q96QK1 AC091953.3-201ENST00000623220 236 ntBASIC4.76□□□□□ -1.65
VPS35Q96QK1 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS35Q96QK1 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS35Q96QK1 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS35Q96QK1 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS35Q96QK1 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS35Q96QK1 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS35Q96QK1 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS35Q96QK1 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS35Q96QK1 MIR7-1-201ENST00000384871 110 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AL035419.1-201ENST00000397037 564 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AL035696.2-201ENST00000407941 709 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 AL360081.1-201ENST00000428299 555 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 CYCSP11-201ENST00000436426 315 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AC006466.1-201ENST00000438721 289 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AL035551.1-201ENST00000446931 348 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 NPM1P39-201ENST00000449818 867 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 AC010733.1-201ENST00000451515 401 ntBASIC4.75□□□□□ -1.65
VPS35Q96QK1 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS35Q96QK1 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS35Q96QK1 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms