Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 RPL23AP25-201ENST00000430973 463 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 HLA-N-201ENST00000437516 135 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 AC083982.1-201ENST00000485679 344 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 IFITM8P-201ENST00000522529 394 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 DYNLL1P4-201ENST00000549314 266 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 AP005119.2-201ENST00000579735 1105 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 AC073137.1-201ENST00000605636 634 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 AC020634.1-201ENST00000608701 549 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 AC074276.2-201ENST00000619891 348 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 AC091905.2-201ENST00000623143 306 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 ALG13-230ENST00000623189 458 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 AC091905.4-201ENST00000623432 202 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 A2MP1-204ENST00000566278 4130 ntBASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC112Q8NEF3 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 AL109941.1-201ENST00000401925 229 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 FCF1P5-201ENST00000406490 482 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 RNA5SP39-201ENST00000411245 120 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 OR51B3P-201ENST00000412287 913 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 BX119904.1-201ENST00000432026 348 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 RHOT1P3-201ENST00000436571 331 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 AL451050.1-201ENST00000450126 415 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 SEPT14P1-201ENST00000458703 648 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 BRD9P1-201ENST00000529855 560 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 CR383656.6-201ENST00000550518 394 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 CYP4A43P-201ENST00000568156 121 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 AC022726.1-201ENST00000587475 207 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 MEMO1P5-201ENST00000604810 406 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 AP002360.3-201ENST00000607673 710 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 OR7A19P-201ENST00000608051 733 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 MIR6748-201ENST00000610433 71 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 AL138721.1-201ENST00000616756 179 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 AC074140.1-201ENST00000621617 208 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 AC011266.1-201ENST00000624119 3569 ntBASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
CCDC112Q8NEF3 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 AC010300.1-201ENST00000600671 5134 ntBASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 RNA5SP455-201ENST00000365190 119 ntBASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 AC104306.1-201ENST00000449702 371 ntBASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 AC002553.2-201ENST00000453217 340 ntBASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 MRPS33P2-201ENST00000507850 322 ntBASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 AC092593.2-201ENST00000513866 913 ntBASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 AC133555.2-201ENST00000550213 292 ntBASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 MIR4691-201ENST00000583764 85 ntBASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 AP001521.2-201ENST00000608772 546 ntBASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC112Q8NEF3 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms