Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXA1P55317 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
FOXA1P55317 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA1P55317 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
FOXA1P55317 RNA5SP52-201ENST00000362448 134 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 RNA5SP87-201ENST00000384155 118 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 MIR937-201ENST00000401271 86 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.26□□□□□ -1.73
FOXA1P55317 DYNLL1P7-201ENST00000429273 258 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 VN1R54P-201ENST00000435210 1049 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXA1P55317 UBE2V2P4-201ENST00000447495 259 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 VN1R32P-201ENST00000452234 905 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXA1P55317 RN7SL610P-201ENST00000463845 291 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 AC092324.1-201ENST00000468671 324 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.26□□□□□ -1.73
FOXA1P55317 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA1P55317 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXA1P55317 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXA1P55317 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXA1P55317 AC087283.1-201ENST00000604029 1074 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 FAM25E-202ENST00000608562 189 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 AC004948.1-201ENST00000609858 672 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 SNX18P1Y-201ENST00000616231 511 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXA1P55317 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA1P55317 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA1P55317 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA1P55317 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA1P55317 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA1P55317 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA1P55317 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXA1P55317 TTC39DP-201ENST00000416781 1688 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
FOXA1P55317 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA1P55317 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
FOXA1P55317 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXA1P55317 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
FOXA1P55317 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA1P55317 RNU4-44P-201ENST00000363050 141 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 RNA5SP28-201ENST00000363841 119 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 RNU1-130P-201ENST00000363930 160 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
FOXA1P55317 AC097374.1-203ENST00000400783 485 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.25□□□□□ -1.73
FOXA1P55317 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXA1P55317 AL590762.4-201ENST00000425885 253 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 PRELID3BP10-201ENST00000431957 584 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA1P55317 ABCF2P2-201ENST00000450549 296 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.25□□□□□ -1.73
FOXA1P55317 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
FOXA1P55317 NDUFA5P12-201ENST00000503796 343 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 AC002456.2-201ENST00000509356 380 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXA1P55317 RFPL4AP5-201ENST00000514977 504 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXA1P55317 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.25□□□□□ -1.73
FOXA1P55317 PCNPP1-201ENST00000552501 511 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 RN7SL690P-201ENST00000582087 240 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 AL034374.2-201ENST00000605281 548 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 AL031666.3-201ENST00000609320 1006 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 TMEM30CP-203ENST00000637814 1035 ntBASIC4.25□□□□□ -1.73
FOXA1P55317 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXA1P55317 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
FOXA1P55317 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
FOXA1P55317 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA1P55317 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA1P55317 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXA1P55317 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXA1P55317 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
FOXA1P55317 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.24□□□□□ -1.73
FOXA1P55317 CR383656.5-201ENST00000547616 1340 ntBASIC4.24□□□□□ -1.73
FOXA1P55317 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA1P55317 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA1P55317 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
FOXA1P55317 MTHFD2P5-201ENST00000320415 844 ntBASIC4.24□□□□□ -1.73
FOXA1P55317 SNORA70F-201ENST00000384142 135 ntBASIC4.24□□□□□ -1.73
FOXA1P55317 SNORD66.1-201ENST00000391230 76 ntBASIC4.24□□□□□ -1.73
FOXA1P55317 GLULP6-201ENST00000399502 913 ntBASIC4.24□□□□□ -1.73
FOXA1P55317 MIR298-201ENST00000401212 88 ntBASIC4.24□□□□□ -1.73
FOXA1P55317 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA1P55317 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXA1P55317 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA1P55317 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA1P55317 RPL12P3-201ENST00000440080 396 ntBASIC4.24□□□□□ -1.73
FOXA1P55317 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA1P55317 AC010326.1-201ENST00000462726 602 ntBASIC4.24□□□□□ -1.73
FOXA1P55317 RPL7AP28-201ENST00000464513 571 ntBASIC4.24□□□□□ -1.73
FOXA1P55317 RPL5P16-201ENST00000471467 790 ntBASIC4.24□□□□□ -1.73
FOXA1P55317 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXA1P55317 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA1P55317 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA1P55317 PHBP17-201ENST00000528576 541 ntBASIC4.24□□□□□ -1.73
FOXA1P55317 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA1P55317 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA1P55317 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA1P55317 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA1P55317 AL133243.1-201ENST00000614487 366 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms