Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
COL4A4P53420 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.8□□□□□ -1.64
COL4A4P53420 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
COL4A4P53420 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
COL4A4P53420 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL4A4P53420 RNA5SP124-201ENST00000362739 110 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AL672167.2-201ENST00000377164 879 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AMZ2P2-201ENST00000406819 1057 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 RN7SKP202-201ENST00000410439 330 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A4P53420 NPM1P26-201ENST00000426339 738 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AL445584.1-201ENST00000431451 330 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 ISCUP1-201ENST00000454451 448 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AC146944.2-203ENST00000502493 354 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 PGBD4P4-201ENST00000509673 613 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AC008958.1-201ENST00000511047 682 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AC139495.1-202ENST00000513164 354 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.8□□□□□ -1.64
COL4A4P53420 AC124068.1-201ENST00000563131 678 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AC005899.7-201ENST00000618199 588 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AC006065.6-201ENST00000625201 545 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 OR2L1P-202ENST00000641567 1023 ntBASIC4.8□□□□□ -1.64
COL4A4P53420 AL137918.1-201ENST00000624542 1922 ntBASIC4.79□□□□□ -1.64
COL4A4P53420 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
COL4A4P53420 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.79□□□□□ -1.64
COL4A4P53420 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC4.79□□□□□ -1.64
COL4A4P53420 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A4P53420 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
COL4A4P53420 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A4P53420 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.79□□□□□ -1.64
COL4A4P53420 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A4P53420 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A4P53420 RNU6ATAC-201ENST00000408749 126 ntBASIC4.79□□□□□ -1.64
COL4A4P53420 SNORA74C-2-201ENST00000411179 201 ntBASIC4.79□□□□□ -1.64
COL4A4P53420 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC4.79□□□□□ -1.64
COL4A4P53420 AL691449.1-201ENST00000426570 421 ntBASIC4.79□□□□□ -1.64
COL4A4P53420 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A4P53420 AL935212.3-201ENST00000450729 284 ntBASIC4.79□□□□□ -1.64
COL4A4P53420 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A4P53420 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.79□□□□□ -1.64
COL4A4P53420 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A4P53420 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A4P53420 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.79□□□□□ -1.64
COL4A4P53420 MTND4LP31-201ENST00000514859 294 ntBASIC4.79□□□□□ -1.64
COL4A4P53420 CCNG2P1-201ENST00000549521 1000 ntBASIC4.79□□□□□ -1.64
COL4A4P53420 AC087477.6-201ENST00000559595 843 ntBASIC4.79□□□□□ -1.64
COL4A4P53420 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.79□□□□□ -1.64
COL4A4P53420 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
COL4A4P53420 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.79□□□□□ -1.64
COL4A4P53420 AL137141.1-201ENST00000624622 4836 ntBASIC4.79□□□□□ -1.64
COL4A4P53420 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
COL4A4P53420 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A4P53420 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL4A4P53420 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A4P53420 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.78□□□□□ -1.64
COL4A4P53420 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
COL4A4P53420 OR5P1P-201ENST00000299512 925 ntBASIC4.78□□□□□ -1.64
COL4A4P53420 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A4P53420 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.78□□□□□ -1.64
COL4A4P53420 RPS7P7-201ENST00000463499 571 ntBASIC4.78□□□□□ -1.64
COL4A4P53420 AC053481.1-201ENST00000467217 306 ntBASIC4.78□□□□□ -1.64
COL4A4P53420 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A4P53420 AL132838.2-201ENST00000492041 314 ntBASIC4.78□□□□□ -1.64
COL4A4P53420 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC4.78□□□□□ -1.64
COL4A4P53420 AC026726.1-201ENST00000512859 601 ntBASIC4.78□□□□□ -1.64
COL4A4P53420 AC108064.1-201ENST00000513791 460 ntBASIC4.78□□□□□ -1.64
COL4A4P53420 AC009852.2-201ENST00000567898 485 ntBASIC4.78□□□□□ -1.64
COL4A4P53420 AL354984.3-201ENST00000604803 325 ntBASIC4.78□□□□□ -1.64
COL4A4P53420 AP002360.3-201ENST00000607673 710 ntBASIC4.78□□□□□ -1.64
COL4A4P53420 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A4P53420 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A4P53420 AL356121.2-201ENST00000624715 780 ntBASIC4.78□□□□□ -1.64
COL4A4P53420 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.78□□□□□ -1.64
COL4A4P53420 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A4P53420 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL4A4P53420 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
COL4A4P53420 TCP11X1-202ENST00000622971 1372 ntBASIC4.78□□□□□ -1.64
COL4A4P53420 AL391684.1-202ENST00000641293 1636 ntBASIC4.78□□□□□ -1.64
COL4A4P53420 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
COL4A4P53420 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
COL4A4P53420 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A4P53420 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A4P53420 AC010266.2-201ENST00000564741 3255 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A4P53420 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A4P53420 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A4P53420 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A4P53420 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.77□□□□□ -1.65
COL4A4P53420 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL4A4P53420 SDHCP2-201ENST00000398565 501 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.77□□□□□ -1.65
COL4A4P53420 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.77□□□□□ -1.65
COL4A4P53420 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.77□□□□□ -1.65
COL4A4P53420 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.77□□□□□ -1.65
COL4A4P53420 AL133547.1-201ENST00000448546 220 ntBASIC4.77□□□□□ -1.65
COL4A4P53420 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.77□□□□□ -1.65
COL4A4P53420 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.77□□□□□ -1.65
COL4A4P53420 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.77□□□□□ -1.65
COL4A4P53420 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.77□□□□□ -1.65
COL4A4P53420 AC138965.3-201ENST00000623875 498 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms