Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC6.01□□□□□ -1.45
HOXC9P31274 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
HOXC9P31274 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HOXC9P31274 AL669831.5-218ENST00000591702 1873 ntBASIC6□□□□□ -1.45
HOXC9P31274 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC6□□□□□ -1.45
HOXC9P31274 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6□□□□□ -1.45
HOXC9P31274 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
HOXC9P31274 RNA5SP388-201ENST00000362584 119 ntBASIC6□□□□□ -1.45
HOXC9P31274 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC6□□□□□ -1.45
HOXC9P31274 AC122718.1-201ENST00000439448 744 ntBASIC6□□□□□ -1.45
HOXC9P31274 RPL7P33-201ENST00000444159 742 ntBASIC6□□□□□ -1.45
HOXC9P31274 AC009963.4-201ENST00000448535 339 ntBASIC6□□□□□ -1.45
HOXC9P31274 OR6C72P-201ENST00000451403 892 ntBASIC6□□□□□ -1.45
HOXC9P31274 AL513343.1-201ENST00000451818 792 ntBASIC6□□□□□ -1.45
HOXC9P31274 FAM133DP-201ENST00000464802 691 ntBASIC6□□□□□ -1.45
HOXC9P31274 RNA5SP249-201ENST00000516127 99 ntBASIC6□□□□□ -1.45
HOXC9P31274 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC6□□□□□ -1.45
HOXC9P31274 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC6□□□□□ -1.45
HOXC9P31274 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC6□□□□□ -1.45
HOXC9P31274 VN1R85P-201ENST00000601587 426 ntBASIC6□□□□□ -1.45
HOXC9P31274 VN1R81P-201ENST00000602085 372 ntBASIC6□□□□□ -1.45
HOXC9P31274 AC005520.3-201ENST00000602874 370 ntBASIC6□□□□□ -1.45
HOXC9P31274 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC6□□□□□ -1.45
HOXC9P31274 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC6□□□□□ -1.45
HOXC9P31274 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6□□□□□ -1.45
HOXC9P31274 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
HOXC9P31274 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
HOXC9P31274 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.99□□□□□ -1.45
HOXC9P31274 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
HOXC9P31274 AC073136.1-201ENST00000449426 2884 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.99□□□□□ -1.45
HOXC9P31274 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.99□□□□□ -1.45
HOXC9P31274 MIR331-201ENST00000362302 94 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 ATP5F1P2-201ENST00000398143 760 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC5.99□□□□□ -1.45
HOXC9P31274 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.99□□□□□ -1.45
HOXC9P31274 RPL21P43-201ENST00000425440 472 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 TRIM60P13-201ENST00000432350 1283 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.99□□□□□ -1.45
HOXC9P31274 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.99□□□□□ -1.45
HOXC9P31274 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.99□□□□□ -1.45
HOXC9P31274 AC089999.1-201ENST00000460336 374 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.99□□□□□ -1.45
HOXC9P31274 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.99□□□□□ -1.45
HOXC9P31274 SNORA70.11-201ENST00000515987 138 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 SNORA70.13-201ENST00000516116 138 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC5.99□□□□□ -1.45
HOXC9P31274 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.99□□□□□ -1.45
HOXC9P31274 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.99□□□□□ -1.45
HOXC9P31274 MTND2P17-201ENST00000550281 688 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.99□□□□□ -1.45
HOXC9P31274 AC011270.1-201ENST00000558606 583 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 RN7SL176P-201ENST00000580352 264 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 AC113403.1-201ENST00000604910 193 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 AC024941.1-201ENST00000612250 334 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC5.99□□□□□ -1.45
HOXC9P31274 AP003497.2-201ENST00000624220 967 ntBASIC5.99□□□□□ -1.45
HOXC9P31274 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
HOXC9P31274 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.99□□□□□ -1.45
HOXC9P31274 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
HOXC9P31274 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
HOXC9P31274 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
HOXC9P31274 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
HOXC9P31274 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
HOXC9P31274 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.98□□□□□ -1.45
HOXC9P31274 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.98□□□□□ -1.45
HOXC9P31274 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
HOXC9P31274 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.98□□□□□ -1.45
HOXC9P31274 AC104623.2-202ENST00000623477 4002 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
HOXC9P31274 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
HOXC9P31274 RNU1-13P-201ENST00000384499 162 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 AL080315.1-201ENST00000406055 466 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 RNA5SP317-201ENST00000410176 116 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 RNA5SP311-201ENST00000411290 116 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.98□□□□□ -1.45
HOXC9P31274 SLC4A1APP1-201ENST00000419995 602 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC5.98□□□□□ -1.45
HOXC9P31274 AC114755.5-201ENST00000447760 831 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 TPRKBP1-201ENST00000456243 481 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.98□□□□□ -1.45
HOXC9P31274 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.98□□□□□ -1.45
HOXC9P31274 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
HOXC9P31274 RNA5SP315-201ENST00000516340 116 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 RNA5SP230-201ENST00000517039 122 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 RNA5SP312-201ENST00000517068 116 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 AC009268.1-201ENST00000561352 1203 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 AC074050.1-201ENST00000563247 211 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 MIR1254-2-201ENST00000579553 63 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.98□□□□□ -1.45
HOXC9P31274 AC022387.2-201ENST00000604050 448 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 AL591034.3-201ENST00000605511 685 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 AC023043.4-201ENST00000612081 449 ntBASIC5.98□□□□□ -1.45
HOXC9P31274 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.98□□□□□ -1.45
HOXC9P31274 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
HOXC9P31274 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
HOXC9P31274 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
HOXC9P31274 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.98□□□□□ -1.45
HOXC9P31274 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
HOXC9P31274 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 136.4 ms