Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 EIF4A1P11-201ENST00000451239 222 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AC009963.2-201ENST00000453431 138 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 HMGB1P4-201ENST00000455362 567 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AC092905.1-201ENST00000467527 949 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 RN7SL354P-201ENST00000469282 294 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 RN7SL319P-201ENST00000480656 221 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AC011005.3-201ENST00000491624 395 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 RPL23AP72-201ENST00000492447 435 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 RNA5SP43-201ENST00000516559 110 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 HMGB1P46-201ENST00000520062 610 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AC034205.1-201ENST00000520621 638 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 GCSHP4-201ENST00000538792 439 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 MIR4660-201ENST00000583549 74 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AL512782.1-201ENST00000603093 364 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 MTCO3P22-201ENST00000603219 784 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 MIR7703-201ENST00000620784 77 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 DDX6P1-205ENST00000441966 1436 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 AC079298.1-201ENST00000625026 1619 ntBASIC4.94□□□□□ -1.62
PCDHGA1Q9Y5H4 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AC079097.1-201ENST00000512187 1399 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AC096656.1-201ENST00000623826 1364 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 DDX18P4-201ENST00000511690 1966 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AL359715.3-201ENST00000569267 2123 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 SNORA70.2-201ENST00000364506 135 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 MTND2P21-201ENST00000436242 1042 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 MTND5P8-201ENST00000449817 1083 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 PPIAP21-201ENST00000464473 501 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 RPS23P7-201ENST00000466210 444 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 CCDC75P1-201ENST00000469247 791 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 METTL15P1-201ENST00000481421 1045 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 RPSAP51-201ENST00000497462 645 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 RNU6-1004P-201ENST00000516584 111 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 RNU6-1308P-201ENST00000516817 103 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 LSM3P2-201ENST00000551246 273 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AC023158.1-201ENST00000561632 1025 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AC022884.3-201ENST00000579571 248 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 VN1R84P-201ENST00000593697 235 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 PSMA6P4-201ENST00000603247 718 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AC105254.2-201ENST00000603636 436 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AC104687.2-201ENST00000604442 342 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AC242628.1-201ENST00000606810 391 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AL391834.1-201ENST00000609609 560 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 AC083809.1-201ENST00000615051 472 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.93□□□□□ -1.62
PCDHGA1Q9Y5H4 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms