Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AL136231.1-201ENST00000429407 730 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 HMGB1P31-201ENST00000437242 427 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 MTCYBP34-201ENST00000439552 670 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 Z99127.2-201ENST00000441426 334 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 MTND1P18-201ENST00000448191 573 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 RPS27AP16-201ENST00000492222 470 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 GLUD1P3-202ENST00000508551 200 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC008837.1-201ENST00000511513 412 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC104417.1-201ENST00000523974 751 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 CENPUP1-201ENST00000526649 1202 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC009962.1-201ENST00000567327 3813 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC011500.1-201ENST00000601963 469 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 WISP1-OT1-201ENST00000602893 642 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC004948.1-201ENST00000609858 672 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC008443.7-201ENST00000622195 246 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 DUXAP9-208ENST00000622815 614 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AL034546.1-201ENST00000623740 3693 ntBASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
CCDC39Q9UFE4 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.84□□□□□ -1.32
CCDC39Q9UFE4 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 UBE2Q2P1-202ENST00000354771 883 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AL672167.1-206ENST00000356293 943 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 SNORA21-201ENST00000362423 132 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 RNU6-1331P-201ENST00000363658 106 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 RN7SKP250-201ENST00000363924 321 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 THEM7P-201ENST00000419556 672 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC130360.1-201ENST00000425489 1117 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AL512593.1-201ENST00000444758 779 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 COX6CP2-201ENST00000444980 225 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC010240.2-201ENST00000445363 1205 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC002553.3-201ENST00000453002 341 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 CCDC11P1-201ENST00000503137 1162 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC091874.2-201ENST00000505889 720 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 NPM1P21-201ENST00000513394 762 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 RN7SKP244-201ENST00000516513 307 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 SEC11B-201ENST00000518383 499 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC130365.2-201ENST00000525882 1201 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AL138976.2-201ENST00000563989 694 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AL078601.3-201ENST00000573303 535 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC011260.1-201ENST00000578420 472 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 TEX41-218ENST00000596540 882 ntTSL 5 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AL080312.2-201ENST00000613001 630 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 RFPL4AP6-201ENST00000616792 846 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 AP000550.3-201ENST00000637734 379 ntBASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
CCDC39Q9UFE4 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
CCDC39Q9UFE4 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms