Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
PDLIM3Q53GG5 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
PDLIM3Q53GG5 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC4.5□□□□□ -1.69
PDLIM3Q53GG5 AC021242.1-201ENST00000507315 2035 ntBASIC4.5□□□□□ -1.69
PDLIM3Q53GG5 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
PDLIM3Q53GG5 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 MTCO1P4-201ENST00000520516 1409 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC011155.1-201ENST00000316512 456 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AL159987.1-201ENST00000347911 293 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 CYB5AP4-201ENST00000396692 399 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RN7SKP222-201ENST00000410651 315 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AL133325.1-201ENST00000421090 382 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AL606495.1-201ENST00000422100 813 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RPL7P56-201ENST00000429441 717 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 MTCO3P21-201ENST00000430791 643 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AL049745.1-201ENST00000433953 286 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 PSMD10P3-201ENST00000437000 448 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AL390119.1-201ENST00000440329 312 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC069540.1-201ENST00000446320 988 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RPS4XP12-201ENST00000461747 709 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AP000942.1-201ENST00000463969 747 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC092905.1-201ENST00000467527 949 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RPL35AP19-201ENST00000469425 329 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RN7SL583P-201ENST00000475692 287 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RN7SL222P-201ENST00000476452 299 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RPS3AP15-201ENST00000483874 781 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC021193.1-201ENST00000511607 420 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RNU5A-7P-201ENST00000515979 116 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 IGLV3-24-201ENST00000517477 197 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC021678.3-201ENST00000517893 476 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC022832.1-201ENST00000530718 645 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC006530.1-201ENST00000555980 571 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC090312.1-201ENST00000580637 348 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RN7SL52P-201ENST00000584271 284 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 BNIP3P33-201ENST00000598912 569 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC090948.2-201ENST00000607363 564 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC097504.2-201ENST00000608088 454 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RMST_10.1-201ENST00000616309 154 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RN7SL722P-201ENST00000617780 284 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RN7SL565P-201ENST00000618246 284 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC010872.1-201ENST00000624225 675 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC016717.3-201ENST00000624730 554 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 AC100757.1-201ENST00000616872 1835 ntBASIC4.49□□□□□ -1.69
PDLIM3Q53GG5 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
PDLIM3Q53GG5 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
PDLIM3Q53GG5 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
PDLIM3Q53GG5 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
PDLIM3Q53GG5 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
PDLIM3Q53GG5 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.48□□□□□ -1.69
PDLIM3Q53GG5 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.48□□□□□ -1.69
PDLIM3Q53GG5 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
PDLIM3Q53GG5 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
PDLIM3Q53GG5 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
PDLIM3Q53GG5 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
PDLIM3Q53GG5 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms