Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP41Q3LFD5 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP41Q3LFD5 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP41Q3LFD5 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP41Q3LFD5 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP41Q3LFD5 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP41Q3LFD5 MUC2-202ENST00000613187 4845 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP41Q3LFD5 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC107021.2-201ENST00000567714 2095 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP41Q3LFD5 RAD1P1-201ENST00000231383 813 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP41Q3LFD5 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 MIR141-201ENST00000384975 95 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 ATP5HP3-201ENST00000396994 486 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 ATP5F1P6-201ENST00000402768 767 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 RPS16P5-201ENST00000406501 404 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC016397.1-201ENST00000412463 242 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC019050.1-201ENST00000418508 492 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 MTCO2P1-201ENST00000424648 477 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 COX6CP13-201ENST00000428703 226 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC093414.1-201ENST00000434712 514 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 OR1H1P-201ENST00000448731 937 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 SLC25A18P1-201ENST00000449385 454 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC009220.1-201ENST00000451614 275 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 AL513533.1-201ENST00000453728 415 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 RN7SL441P-201ENST00000492388 296 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC108043.1-201ENST00000512696 574 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC027369.5-201ENST00000533838 755 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 SNORD39.2-201ENST00000579995 76 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP41Q3LFD5 AL512782.1-201ENST00000603093 364 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 AC020910.3-201ENST00000603701 874 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 BNIP3P31-201ENST00000604515 566 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 AL590396.2-201ENST00000636511 1041 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 AL731532.2-201ENST00000623542 1953 ntBASIC5.32□□□□□ -1.56
USP41Q3LFD5 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP41Q3LFD5 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.32□□□□□ -1.56
USP41Q3LFD5 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP41Q3LFD5 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC000374.1-201ENST00000434698 1745 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP41Q3LFD5 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC079741.1-201ENST00000321498 212 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
USP41Q3LFD5 UBBP2-201ENST00000376781 231 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 RNU6-31P-201ENST00000384388 108 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 MIR137-201ENST00000385223 102 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 AL034403.1-201ENST00000399414 885 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 RN7SKP97-201ENST00000410966 333 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 GTF2IP5-201ENST00000414608 731 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC093084.1-201ENST00000424233 687 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 RNF2P1-201ENST00000442955 1010 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 GXYLT1P1-201ENST00000446657 490 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC073264.2-201ENST00000448886 166 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC006967.1-201ENST00000467608 589 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
USP41Q3LFD5 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 MORF4L1P3-201ENST00000525966 950 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 AP006289.1-201ENST00000538089 277 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 AC104072.1-201ENST00000568817 668 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 ELOCP28-201ENST00000590044 317 ntBASIC5.31□□□□□ -1.56
USP41Q3LFD5 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.31□□□□□ -1.56
USP41Q3LFD5 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms