Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.29□□□□□ -1.72
FOXA1P55317 AC008536.1-201ENST00000602872 669 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.29□□□□□ -1.72
FOXA1P55317 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.29□□□□□ -1.72
FOXA1P55317 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA1P55317 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
FOXA1P55317 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA1P55317 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA1P55317 BTBD10P1-201ENST00000549824 1352 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA1P55317 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA1P55317 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA1P55317 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA1P55317 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA1P55317 RNU1-15P-201ENST00000353977 144 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXA1P55317 SDHCP2-201ENST00000398565 501 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 AL049697.2-201ENST00000403708 294 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 MIR1911-201ENST00000410783 80 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA1P55317 OR13Z1P-201ENST00000416141 834 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 CYCSP10-201ENST00000417973 294 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 AL358176.3-201ENST00000420757 454 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 AC073335.1-201ENST00000427776 363 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXA1P55317 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA1P55317 RPL7P33-201ENST00000444159 742 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA1P55317 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.28□□□□□ -1.72
FOXA1P55317 EIF2S2P5-201ENST00000457635 968 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA1P55317 AC093270.2-201ENST00000486157 792 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 LDHBP3-201ENST00000514909 822 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.28□□□□□ -1.72
FOXA1P55317 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA1P55317 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA1P55317 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
FOXA1P55317 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.28□□□□□ -1.72
FOXA1P55317 MIR4436B2-201ENST00000581415 91 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXA1P55317 MIR4436B1-201ENST00000583272 91 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXA1P55317 AC005084.1-201ENST00000605160 304 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 MIR6730-201ENST00000622213 67 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 LINC01808-202ENST00000641680 1116 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 NEAT1-202ENST00000501122 22743 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXA1P55317 AC131971.1-201ENST00000332881 1482 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
FOXA1P55317 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.28□□□□□ -1.72
FOXA1P55317 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
FOXA1P55317 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA1P55317 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA1P55317 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA1P55317 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXA1P55317 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA1P55317 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
FOXA1P55317 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXA1P55317 MTCO1P46-201ENST00000451639 1491 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 RNA5SP397-201ENST00000391323 118 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 AL139095.3-201ENST00000419672 1203 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 EIF4EP1-201ENST00000422311 642 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXA1P55317 HLA-N-201ENST00000437516 135 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA1P55317 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.27□□□□□ -1.73
FOXA1P55317 AP000942.1-201ENST00000463969 747 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 RN7SL329P-201ENST00000467740 299 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXA1P55317 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXA1P55317 AC105233.1-201ENST00000498840 781 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.27□□□□□ -1.73
FOXA1P55317 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 RNA5SP497-201ENST00000516081 97 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 HMGB1P19-201ENST00000517578 577 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.27□□□□□ -1.73
FOXA1P55317 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.27□□□□□ -1.73
FOXA1P55317 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXA1P55317 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXA1P55317 AC124068.1-201ENST00000563131 678 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.27□□□□□ -1.73
FOXA1P55317 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXA1P55317 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC4.27□□□□□ -1.73
FOXA1P55317 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.27□□□□□ -1.73
FOXA1P55317 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA1P55317 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXA1P55317 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
FOXA1P55317 AC125257.1-201ENST00000560400 2930 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 AC091046.3-201ENST00000631455 1574 ntBASIC4.27□□□□□ -1.73
FOXA1P55317 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
FOXA1P55317 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
FOXA1P55317 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
FOXA1P55317 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.26□□□□□ -1.73
FOXA1P55317 AC053481.2-202ENST00000582394 1500 ntBASIC4.26□□□□□ -1.73
FOXA1P55317 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXA1P55317 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms