Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
HOXA1P49639 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXA1P49639 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA1P49639 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA1P49639 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.44□□□□□ -1.7
HOXA1P49639 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXA1P49639 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA1P49639 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA1P49639 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
HOXA1P49639 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
HOXA1P49639 AL450326.2-201ENST00000421913 1962 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
HOXA1P49639 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 AC063976.2-201ENST00000425667 3556 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
HOXA1P49639 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXA1P49639 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXA1P49639 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA1P49639 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA1P49639 RNU4-7P-201ENST00000364758 141 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 OR1L6-202ENST00000373684 1044 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 AC019155.1-201ENST00000382242 574 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 RNU6-532P-201ENST00000384318 107 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 RNU6-1242P-201ENST00000391052 103 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 HMGB1P13-201ENST00000406019 642 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC099535.1-201ENST00000408928 371 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 HIGD1AP15-201ENST00000416198 280 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA1P49639 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 RPL23AP4-201ENST00000427757 463 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 RPL7AP49-201ENST00000429522 581 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXA1P49639 AL591438.1-201ENST00000433508 581 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 VN1R110P-201ENST00000438988 971 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 HSFY3P-201ENST00000444242 1191 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC097499.1-201ENST00000444277 208 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA1P49639 AL358794.1-201ENST00000445689 381 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
HOXA1P49639 AL596266.1-201ENST00000448132 400 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AZGP1P2-201ENST00000454506 345 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA1P49639 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA1P49639 RN7SL583P-201ENST00000475692 287 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 RN7SL447P-201ENST00000494711 245 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA1P49639 LSM3P4-201ENST00000502948 309 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA1P49639 AC018797.1-201ENST00000510791 255 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC074087.1-201ENST00000512059 724 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 HSD3BP3-201ENST00000514706 994 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 CDC42P3-201ENST00000518493 633 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
HOXA1P49639 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA1P49639 MINCR-206ENST00000524335 499 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXA1P49639 DUXAP5-201ENST00000529668 529 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 EIF4A2P5-201ENST00000529914 499 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA1P49639 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC4.43□□□□□ -1.7
HOXA1P49639 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXA1P49639 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA1P49639 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA1P49639 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA1P49639 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA1P49639 AC011611.5-201ENST00000552477 578 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 HSPE1P2-201ENST00000554777 306 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AL049870.4-201ENST00000555741 486 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA1P49639 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXA1P49639 MIR4271-201ENST00000582451 67 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC4.43□□□□□ -1.7
HOXA1P49639 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA1P49639 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 GAS5-AS1-201ENST00000602767 694 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA1P49639 AC018618.2-201ENST00000604770 446 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC005377.1-201ENST00000605126 456 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 uc_338.18-201ENST00000615451 175 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AL035461.2-201ENST00000619201 524 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC120349.3-201ENST00000624377 529 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC111152.1-202ENST00000635848 339 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA1P49639 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HOXA1P49639 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
HOXA1P49639 ZNF849P-201ENST00000594711 1566 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 CIR1P2-201ENST00000514821 1342 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 AL355578.1-201ENST00000607405 1328 ntBASIC4.43□□□□□ -1.7
HOXA1P49639 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
HOXA1P49639 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA1P49639 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms