Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.92□□□□□ -1.62
MSH3P20585 AC051619.2-201ENST00000559063 397 ntBASIC4.92□□□□□ -1.62
MSH3P20585 AC093510.2-201ENST00000562820 896 ntBASIC4.92□□□□□ -1.62
MSH3P20585 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.92□□□□□ -1.62
MSH3P20585 AC011487.3-201ENST00000593607 453 ntBASIC4.92□□□□□ -1.62
MSH3P20585 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.92□□□□□ -1.62
MSH3P20585 AL049794.2-201ENST00000616301 365 ntBASIC4.92□□□□□ -1.62
MSH3P20585 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.92□□□□□ -1.62
MSH3P20585 AC016957.2-201ENST00000616998 848 ntBASIC4.92□□□□□ -1.62
MSH3P20585 AL049777.1-201ENST00000622740 518 ntBASIC4.92□□□□□ -1.62
MSH3P20585 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.92□□□□□ -1.62
MSH3P20585 CASC19-222ENST00000641321 1173 ntBASIC4.92□□□□□ -1.62
MSH3P20585 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
MSH3P20585 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.92□□□□□ -1.62
MSH3P20585 MAPK10-320ENST00000641462 6696 ntBASIC4.92□□□□□ -1.62
MSH3P20585 AC017002.4-201ENST00000604721 1525 ntBASIC4.92□□□□□ -1.62
MSH3P20585 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSH3P20585 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSH3P20585 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSH3P20585 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSH3P20585 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSH3P20585 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.91□□□□□ -1.62
MSH3P20585 AC021242.1-201ENST00000507315 2035 ntBASIC4.91□□□□□ -1.62
MSH3P20585 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.91□□□□□ -1.62
MSH3P20585 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
MSH3P20585 RNA5SP123-201ENST00000363244 119 ntBASIC4.91□□□□□ -1.62
MSH3P20585 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
MSH3P20585 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSH3P20585 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
MSH3P20585 GAPDHP15-201ENST00000398586 975 ntBASIC4.91□□□□□ -1.62
MSH3P20585 AL353692.2-201ENST00000407054 335 ntBASIC4.91□□□□□ -1.62
MSH3P20585 UQCRFS1P3-201ENST00000407697 385 ntBASIC4.91□□□□□ -1.62
MSH3P20585 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.91□□□□□ -1.62
MSH3P20585 OR2AH1P-201ENST00000425717 928 ntBASIC4.91□□□□□ -1.62
MSH3P20585 UBE2D3P3-201ENST00000426992 425 ntBASIC4.91□□□□□ -1.62
MSH3P20585 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC4.91□□□□□ -1.62
MSH3P20585 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.91□□□□□ -1.62
MSH3P20585 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
MSH3P20585 AC245517.2-201ENST00000442890 346 ntBASIC4.91□□□□□ -1.62
MSH3P20585 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.91□□□□□ -1.62
MSH3P20585 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.91□□□□□ -1.62
MSH3P20585 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.91□□□□□ -1.62
MSH3P20585 RN7SL329P-201ENST00000467740 299 ntBASIC4.91□□□□□ -1.62
MSH3P20585 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.91□□□□□ -1.62
MSH3P20585 OR9N1P-202ENST00000494289 481 ntBASIC4.91□□□□□ -1.62
MSH3P20585 RN7SL591P-201ENST00000496150 292 ntBASIC4.91□□□□□ -1.62
MSH3P20585 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.91□□□□□ -1.62
MSH3P20585 AC119751.4-201ENST00000507498 357 ntBASIC4.91□□□□□ -1.62
MSH3P20585 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.91□□□□□ -1.62
MSH3P20585 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.91□□□□□ -1.62
MSH3P20585 C1GALT1P2-201ENST00000510813 1104 ntBASIC4.91□□□□□ -1.62
MSH3P20585 RN7SKP157-201ENST00000516174 282 ntBASIC4.91□□□□□ -1.62
MSH3P20585 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.91□□□□□ -1.62
MSH3P20585 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.91□□□□□ -1.62
MSH3P20585 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
MSH3P20585 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.91□□□□□ -1.62
MSH3P20585 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC4.91□□□□□ -1.62
MSH3P20585 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
MSH3P20585 MIR4646-201ENST00000580775 63 ntBASIC4.91□□□□□ -1.62
MSH3P20585 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.91□□□□□ -1.62
MSH3P20585 AC018645.2-201ENST00000609151 472 ntBASIC4.91□□□□□ -1.62
MSH3P20585 AC090510.2-201ENST00000617465 629 ntBASIC4.91□□□□□ -1.62
MSH3P20585 AL353662.3-201ENST00000625131 237 ntBASIC4.91□□□□□ -1.62
MSH3P20585 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
MSH3P20585 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.91□□□□□ -1.62
MSH3P20585 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.91□□□□□ -1.62
MSH3P20585 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSH3P20585 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.91□□□□□ -1.62
MSH3P20585 MTND4P9-201ENST00000507819 1346 ntBASIC4.91□□□□□ -1.62
MSH3P20585 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
MSH3P20585 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.91□□□□□ -1.62
MSH3P20585 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.62
MSH3P20585 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
MSH3P20585 INTS6P1-201ENST00000504674 2530 ntBASIC4.9□□□□□ -1.62
MSH3P20585 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.9□□□□□ -1.62
MSH3P20585 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.62
MSH3P20585 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
MSH3P20585 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
MSH3P20585 AC027228.2-201ENST00000567141 2154 ntBASIC4.9□□□□□ -1.62
MSH3P20585 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.9□□□□□ -1.62
MSH3P20585 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
MSH3P20585 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSH3P20585 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
MSH3P20585 RN7SKP95-201ENST00000362860 303 ntBASIC4.9□□□□□ -1.63
MSH3P20585 RNU6-650P-201ENST00000365658 111 ntBASIC4.9□□□□□ -1.63
MSH3P20585 RNU6-1263P-201ENST00000384601 106 ntBASIC4.9□□□□□ -1.63
MSH3P20585 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
MSH3P20585 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSH3P20585 AL035405.1-201ENST00000400795 710 ntBASIC4.9□□□□□ -1.63
MSH3P20585 CHEK2P3-201ENST00000416118 248 ntBASIC4.9□□□□□ -1.63
MSH3P20585 OR13Z1P-201ENST00000416141 834 ntBASIC4.9□□□□□ -1.63
MSH3P20585 QRSL1P2-201ENST00000418582 964 ntBASIC4.9□□□□□ -1.63
MSH3P20585 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC4.9□□□□□ -1.63
MSH3P20585 RPL34P6-201ENST00000432390 345 ntBASIC4.9□□□□□ -1.63
MSH3P20585 AC007563.3-201ENST00000433233 371 ntBASIC4.9□□□□□ -1.63
MSH3P20585 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSH3P20585 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC4.9□□□□□ -1.63
MSH3P20585 RNF2P1-201ENST00000442955 1010 ntBASIC4.9□□□□□ -1.63
MSH3P20585 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.9□□□□□ -1.63
MSH3P20585 TRY2P-201ENST00000448860 689 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms