Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.09□□□□□ -1.59
MSH4O15457 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
MSH4O15457 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC5.09□□□□□ -1.59
MSH4O15457 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.09□□□□□ -1.59
MSH4O15457 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.09□□□□□ -1.59
MSH4O15457 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
MSH4O15457 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.09□□□□□ -1.6
MSH4O15457 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSH4O15457 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH4O15457 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSH4O15457 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.08□□□□□ -1.6
MSH4O15457 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH4O15457 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSH4O15457 UBBP2-201ENST00000376781 231 ntBASIC5.08□□□□□ -1.6
MSH4O15457 EI24P3-201ENST00000399046 1062 ntBASIC5.08□□□□□ -1.6
MSH4O15457 TMSB10P2-201ENST00000416049 131 ntBASIC5.08□□□□□ -1.6
MSH4O15457 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.08□□□□□ -1.6
MSH4O15457 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.08□□□□□ -1.6
MSH4O15457 AC009480.2-201ENST00000422916 432 ntBASIC5.08□□□□□ -1.6
MSH4O15457 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.08□□□□□ -1.6
MSH4O15457 RPL21P91-201ENST00000429231 479 ntBASIC5.08□□□□□ -1.6
MSH4O15457 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSH4O15457 AL445433.1-201ENST00000457507 257 ntBASIC5.08□□□□□ -1.6
MSH4O15457 AC112206.1-201ENST00000468416 477 ntBASIC5.08□□□□□ -1.6
MSH4O15457 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.08□□□□□ -1.6
MSH4O15457 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5.08□□□□□ -1.6
MSH4O15457 AC113398.2-201ENST00000507630 558 ntBASIC5.08□□□□□ -1.6
MSH4O15457 AC138938.1-201ENST00000515431 782 ntBASIC5.08□□□□□ -1.6
MSH4O15457 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.08□□□□□ -1.6
MSH4O15457 C1GALT1P3-201ENST00000522049 819 ntBASIC5.08□□□□□ -1.6
MSH4O15457 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH4O15457 OR8A2P-201ENST00000528631 952 ntBASIC5.08□□□□□ -1.6
MSH4O15457 HIGD1AP5-201ENST00000529959 259 ntBASIC5.08□□□□□ -1.6
MSH4O15457 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSH4O15457 GSTP1P1-201ENST00000548078 319 ntBASIC5.08□□□□□ -1.6
MSH4O15457 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH4O15457 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH4O15457 RPL26P30-202ENST00000602923 645 ntBASIC5.08□□□□□ -1.6
MSH4O15457 BPIFA4P-203ENST00000603168 689 ntBASIC5.08□□□□□ -1.6
MSH4O15457 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.08□□□□□ -1.6
MSH4O15457 AC010435.1-201ENST00000623353 1177 ntBASIC5.08□□□□□ -1.6
MSH4O15457 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.08□□□□□ -1.6
MSH4O15457 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSH4O15457 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH4O15457 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSH4O15457 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
MSH4O15457 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.08□□□□□ -1.6
MSH4O15457 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH4O15457 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH4O15457 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
MSH4O15457 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.07□□□□□ -1.6
MSH4O15457 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH4O15457 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH4O15457 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
MSH4O15457 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH4O15457 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH4O15457 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH4O15457 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH4O15457 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH4O15457 MIR921-201ENST00000401133 56 ntBASIC5.07□□□□□ -1.6
MSH4O15457 AL139095.3-201ENST00000419672 1203 ntBASIC5.07□□□□□ -1.6
MSH4O15457 GNG5P5-201ENST00000420444 220 ntBASIC5.07□□□□□ -1.6
MSH4O15457 AL356387.2-201ENST00000422272 243 ntBASIC5.07□□□□□ -1.6
MSH4O15457 SCP2-206ENST00000430330 938 ntTSL 2 BASIC5.07□□□□□ -1.6
MSH4O15457 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH4O15457 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH4O15457 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.07□□□□□ -1.6
MSH4O15457 TXNP2-201ENST00000443918 295 ntBASIC5.07□□□□□ -1.6
MSH4O15457 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC5.07□□□□□ -1.6
MSH4O15457 AL161722.1-201ENST00000446972 1032 ntBASIC5.07□□□□□ -1.6
MSH4O15457 AC012671.1-201ENST00000451912 203 ntBASIC5.07□□□□□ -1.6
MSH4O15457 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.07□□□□□ -1.6
MSH4O15457 RPS4XP12-201ENST00000461747 709 ntBASIC5.07□□□□□ -1.6
MSH4O15457 AL591473.1-201ENST00000464297 313 ntBASIC5.07□□□□□ -1.6
MSH4O15457 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
MSH4O15457 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSH4O15457 AC016687.1-201ENST00000482574 353 ntBASIC5.07□□□□□ -1.6
MSH4O15457 AL133372.1-201ENST00000493565 745 ntBASIC5.07□□□□□ -1.6
MSH4O15457 RPS4XP18-201ENST00000495480 763 ntBASIC5.07□□□□□ -1.6
MSH4O15457 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC5.07□□□□□ -1.6
MSH4O15457 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH4O15457 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.07□□□□□ -1.6
MSH4O15457 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH4O15457 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH4O15457 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH4O15457 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH4O15457 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH4O15457 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
MSH4O15457 AC091178.1-203ENST00000584586 279 ntBASIC5.07□□□□□ -1.6
MSH4O15457 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.07□□□□□ -1.6
MSH4O15457 AP001160.4-201ENST00000596971 382 ntBASIC5.07□□□□□ -1.6
MSH4O15457 AC010615.3-201ENST00000597319 394 ntBASIC5.07□□□□□ -1.6
MSH4O15457 AP005212.4-201ENST00000614206 710 ntBASIC5.07□□□□□ -1.6
MSH4O15457 AL121873.1-201ENST00000616013 524 ntBASIC5.07□□□□□ -1.6
MSH4O15457 AC234782.5-201ENST00000617723 324 ntBASIC5.07□□□□□ -1.6
MSH4O15457 MIR6891-201ENST00000618788 93 ntBASIC5.07□□□□□ -1.6
MSH4O15457 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
MSH4O15457 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH4O15457 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.07□□□□□ -1.6
MSH4O15457 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 143.4 ms