Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL356490.1-201ENST00000623079 479 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 AC090617.9-201ENST00000623751 147 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 AL118508.4-201ENST00000624142 1176 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 LINC01739-205ENST00000641890 573 ntBASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC6.69□□□□□ -1.34
CHMP4AQ9BY43 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 RN7SKP74-201ENST00000362849 309 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 MIR589-201ENST00000385238 99 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 RNA5SP241-201ENST00000391326 114 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 Z97832.1-201ENST00000402490 328 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 GPS2P1-201ENST00000411761 986 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 PCNPP4-201ENST00000414817 517 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AL354766.1-201ENST00000423396 542 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AL513321.1-201ENST00000441175 761 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 SUMO2P1-206ENST00000445436 284 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AC073850.1-201ENST00000449243 255 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 BX842559.2-201ENST00000451418 605 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 CBX1P2-201ENST00000453841 458 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 MIR6839-201ENST00000620425 113 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 AC091046.3-201ENST00000631455 1574 ntBASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CHMP4AQ9BY43 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 OR1L6-202ENST00000373684 1044 ntBASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 AL078599.1-201ENST00000402075 293 ntBASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 TCEA1P4-201ENST00000415066 844 ntBASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 LINC01347-201ENST00000417964 355 ntBASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 RPL7P29-201ENST00000437151 728 ntBASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 MTND2P3-201ENST00000452458 470 ntBASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 TPRKBP1-201ENST00000456243 481 ntBASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 OR5M14P-201ENST00000506803 618 ntBASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 NDUFB4P12-201ENST00000513465 390 ntBASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 AC109780.1-201ENST00000451768 1344 ntBASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 AC083843.3-201ENST00000623679 2186 ntBASIC6.67□□□□□ -1.34
CHMP4AQ9BY43 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 OR52B1P-201ENST00000316506 909 ntBASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 SNORA74A-201ENST00000364089 198 ntBASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 AL645927.1-201ENST00000396783 406 ntBASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 AL136231.1-201ENST00000429407 730 ntBASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 AC023347.2-201ENST00000433994 462 ntBASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 RSL24D1P8-201ENST00000434442 492 ntBASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 CEACAMP1-201ENST00000434624 1035 ntBASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 FTH1P16-201ENST00000435241 552 ntBASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
CHMP4AQ9BY43 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC6.66□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms