Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 CR788268.1-201ENST00000603931 1809 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 C4BPAP1-201ENST00000415474 1893 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 U3.3-201ENST00000362986 216 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 MRRF-207ENST00000373729 870 ntTSL 3 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 CHMP1B2P-201ENST00000399581 597 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 AL390774.1-201ENST00000411924 246 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 AC007738.1-201ENST00000413892 348 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 OR2AH1P-201ENST00000425717 928 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 BX323845.1-201ENST00000432417 179 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 CYCSP12-201ENST00000437729 300 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 AL356981.1-201ENST00000454879 684 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 AC091180.1-201ENST00000462104 372 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 AC026348.1-201ENST00000462549 1053 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 RPL5P22-201ENST00000480199 884 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 RNA5SP34-201ENST00000516887 130 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 MAL2-205ENST00000521048 575 ntTSL 4 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 SETP1-201ENST00000556014 845 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 AC011840.5-201ENST00000582125 771 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 AC006116.7-201ENST00000590141 756 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 AP005432.2-201ENST00000608162 586 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 AF129408.1-201ENST00000608767 431 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 AP005229.2-201ENST00000609980 697 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 CASC19-264ENST00000641912 1184 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
NKX3-1Q99801 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 HSPA8P19-201ENST00000505359 1517 ntBASIC4.41□□□□□ -1.7
NKX3-1Q99801 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.41□□□□□ -1.7
NKX3-1Q99801 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
NKX3-1Q99801 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
NKX3-1Q99801 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.7
NKX3-1Q99801 AC126323.6-202ENST00000568092 3511 ntBASIC4.4□□□□□ -1.7
NKX3-1Q99801 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.7
NKX3-1Q99801 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
NKX3-1Q99801 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
NKX3-1Q99801 RNU1-74P-201ENST00000384108 171 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 RNA5SP339-201ENST00000390987 122 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC104297.1-201ENST00000393779 870 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 MIR1286-201ENST00000408112 78 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 RNU2-17P-201ENST00000410290 190 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 RNU4-74P-201ENST00000411280 161 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
NKX3-1Q99801 FO393414.1-201ENST00000428697 1184 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 FAM96AP1-201ENST00000430879 482 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 RPL34P6-201ENST00000432390 345 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AL161722.2-201ENST00000434731 981 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC006994.1-201ENST00000438212 839 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 RPS29P10-201ENST00000439197 166 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AL645931.1-201ENST00000439737 410 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 BTF3P6-201ENST00000448054 499 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 RPL7P55-201ENST00000450522 746 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AURKAPS1-201ENST00000451805 1212 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 RPL7P45-201ENST00000455851 743 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 RNA5SP103-201ENST00000459503 118 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.4□□□□□ -1.71
NKX3-1Q99801 UBA52P7-201ENST00000486088 380 ntBASIC4.4□□□□□ -1.71
NKX3-1Q99801 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 202 ms