Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL162574.1-201ENST00000615702 950 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AP003972.1-201ENST00000625192 5446 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AL035079.1-201ENST00000405210 287 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AL591363.1-201ENST00000450091 483 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 PRELID3BP6-201ENST00000503839 571 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AP001267.4-201ENST00000602598 545 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 MIR6891-201ENST00000618788 93 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AC079777.1-201ENST00000623836 1953 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 MTND5P1-201ENST00000445440 1375 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 PLAGL1-205ENST00000392307 6296 ntTSL 2 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 DNAJA1P3-201ENST00000399417 1194 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 MIR1289-1-201ENST00000408836 144 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 ARAFP1-201ENST00000422172 605 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AC010653.1-201ENST00000571108 881 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AC079587.1-201ENST00000603846 277 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 AC006065.6-201ENST00000625201 545 ntBASIC4.28□□□□□ -1.72
VPS13AQ96RL7 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.28□□□□□ -1.72
VPS13AQ96RL7 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.73
VPS13AQ96RL7 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 RN7SL323P-201ENST00000494712 295 ntBASIC4.27□□□□□ -1.73
VPS13AQ96RL7 AC099522.1-202ENST00000514718 367 ntBASIC4.27□□□□□ -1.73
VPS13AQ96RL7 RN7SKP67-201ENST00000515905 235 ntBASIC4.27□□□□□ -1.73
VPS13AQ96RL7 AC024224.1-201ENST00000538284 609 ntBASIC4.27□□□□□ -1.73
VPS13AQ96RL7 OR7A19P-201ENST00000608051 733 ntBASIC4.27□□□□□ -1.73
VPS13AQ96RL7 uc_338.13-201ENST00000618243 179 ntBASIC4.27□□□□□ -1.73
VPS13AQ96RL7 AC005618.4-201ENST00000625053 554 ntBASIC4.27□□□□□ -1.73
VPS13AQ96RL7 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 MIR331-201ENST00000362302 94 ntBASIC4.27□□□□□ -1.73
VPS13AQ96RL7 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 AC105233.3-201ENST00000531125 744 ntBASIC4.27□□□□□ -1.73
VPS13AQ96RL7 AC018695.5-201ENST00000605872 315 ntBASIC4.27□□□□□ -1.73
VPS13AQ96RL7 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS13AQ96RL7 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 SNORA70.9-201ENST00000384370 135 ntBASIC4.26□□□□□ -1.73
VPS13AQ96RL7 MIR200C-201ENST00000384980 68 ntBASIC4.26□□□□□ -1.73
VPS13AQ96RL7 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 AL358832.1-201ENST00000497800 389 ntBASIC4.26□□□□□ -1.73
VPS13AQ96RL7 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 AC027667.1-201ENST00000545814 304 ntBASIC4.26□□□□□ -1.73
VPS13AQ96RL7 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 AC007620.2-201ENST00000600539 1697 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 Y_RNA.500-201ENST00000384466 111 ntBASIC4.26□□□□□ -1.73
VPS13AQ96RL7 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.26□□□□□ -1.73
VPS13AQ96RL7 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 RNU6-352P-201ENST00000516908 107 ntBASIC4.26□□□□□ -1.73
VPS13AQ96RL7 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS13AQ96RL7 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms