Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC138701.1-201ENST00000524329 714 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 PMS2P3-207ENST00000529061 717 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 GLRXP2-201ENST00000555594 321 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC011447.4-201ENST00000587562 111 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 RPL26P30-202ENST00000602923 645 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AL031320.1-201ENST00000604177 357 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AL109618.2-201ENST00000605527 211 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC011374.2-201ENST00000607135 526 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC104763.3-201ENST00000613765 618 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC011472.4-201ENST00000615848 491 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC090527.3-201ENST00000619041 548 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 MFSD8-216ENST00000641147 4009 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 MTCO1P15-201ENST00000529569 1526 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 HSPD1P11-201ENST00000508643 1702 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AP005432.1-201ENST00000580891 3485 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AL360270.2-201ENST00000562952 5985 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 RN7SKP74-201ENST00000362849 309 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 SNORD56.4-201ENST00000363883 71 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 RNU6-1000P-201ENST00000391066 106 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 RPL22P22-201ENST00000395439 379 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 GLULP6-201ENST00000399502 913 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 VN1R37P-201ENST00000419096 748 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 RPL18P10-201ENST00000425606 538 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AC013262.1-201ENST00000426710 252 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 RSL24D1P6-201ENST00000426934 401 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 CNOT7P1-201ENST00000429006 852 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AC006994.1-201ENST00000438212 839 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 NANOGP9-201ENST00000439890 892 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AC044797.1-201ENST00000445744 679 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AC073264.2-201ENST00000448886 166 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AC093720.1-201ENST00000505681 714 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AC093824.1-201ENST00000508796 343 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AC026402.1-201ENST00000513642 170 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 MTND1P6-201ENST00000523621 946 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AP006289.1-201ENST00000538089 277 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 BNIP3P5-201ENST00000562290 498 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AC122134.1-201ENST00000565664 1104 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 CCDC58P3-201ENST00000590792 430 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AC093799.2-201ENST00000610062 578 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 Z95327.3-201ENST00000610385 572 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 MIR6133-201ENST00000617057 108 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AP004607.9-201ENST00000618202 316 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AC099494.2-201ENST00000623371 978 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 MFSD8-220ENST00000641243 1422 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 MTCO1P7-201ENST00000419523 1542 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL28A1Q2UY09 AC068870.1-201ENST00000563737 2455 ntBASIC5.12□□□□□ -1.59
COL28A1Q2UY09 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms