Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
RNF4P78317 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
RNF4P78317 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.04□□□□□ -1.44
RNF4P78317 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
RNF4P78317 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
RNF4P78317 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
RNF4P78317 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
RNF4P78317 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
RNF4P78317 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.04□□□□□ -1.44
RNF4P78317 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
RNF4P78317 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.04□□□□□ -1.44
RNF4P78317 MOB4-201ENST00000233892 3785 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
RNF4P78317 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.04□□□□□ -1.44
RNF4P78317 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.03□□□□□ -1.44
RNF4P78317 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.03□□□□□ -1.44
RNF4P78317 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 CYP2G2P-201ENST00000594920 1485 ntBASIC6.03□□□□□ -1.44
RNF4P78317 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.03□□□□□ -1.44
RNF4P78317 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.03□□□□□ -1.44
RNF4P78317 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
RNF4P78317 AC046144.1-201ENST00000478559 1853 ntBASIC6.03□□□□□ -1.44
RNF4P78317 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.03□□□□□ -1.44
RNF4P78317 MTCO1P14-201ENST00000441695 1559 ntBASIC6.03□□□□□ -1.44
RNF4P78317 IFIT1P1-201ENST00000400497 1449 ntBASIC6.03□□□□□ -1.44
RNF4P78317 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 RNA5SP485-201ENST00000365053 119 ntBASIC6.03□□□□□ -1.44
RNF4P78317 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC6.03□□□□□ -1.44
RNF4P78317 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 GGA1-205ENST00000405147 575 ntTSL 4 BASIC6.03□□□□□ -1.44
RNF4P78317 FIGN-202ENST00000409634 746 ntTSL 5 BASIC6.03□□□□□ -1.44
RNF4P78317 RN7SKP161-201ENST00000411110 305 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AL596448.1-201ENST00000415024 392 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.03□□□□□ -1.44
RNF4P78317 RPL7AP51-201ENST00000422016 760 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.03□□□□□ -1.44
RNF4P78317 TRIM60P10Y-201ENST00000425589 751 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC6.03□□□□□ -1.44
RNF4P78317 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC6.03□□□□□ -1.44
RNF4P78317 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC6.03□□□□□ -1.44
RNF4P78317 AC003989.1-201ENST00000434569 565 ntBASIC6.03□□□□□ -1.44
RNF4P78317 TRIM60P8Y-201ENST00000436338 762 ntBASIC6.03□□□□□ -1.44
RNF4P78317 OR7E125P-201ENST00000443450 846 ntBASIC6.03□□□□□ -1.44
RNF4P78317 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC6.03□□□□□ -1.44
RNF4P78317 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 AC114755.5-201ENST00000447760 831 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC6.03□□□□□ -1.44
RNF4P78317 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC6.03□□□□□ -1.44
RNF4P78317 AC108463.1-201ENST00000450258 347 ntBASIC6.03□□□□□ -1.44
RNF4P78317 RPL18AP17-201ENST00000455326 198 ntBASIC6.03□□□□□ -1.44
RNF4P78317 YRDCP3-201ENST00000456507 480 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC013267.1-201ENST00000458227 267 ntBASIC6.03□□□□□ -1.44
RNF4P78317 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.03□□□□□ -1.44
RNF4P78317 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC6.03□□□□□ -1.44
RNF4P78317 AC018645.1-201ENST00000505003 109 ntBASIC6.03□□□□□ -1.44
RNF4P78317 SNORA58-201ENST00000505219 137 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.03□□□□□ -1.44
RNF4P78317 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC6.03□□□□□ -1.44
RNF4P78317 AC116917.1-201ENST00000520558 305 ntBASIC6.03□□□□□ -1.44
RNF4P78317 MINCR-206ENST00000524335 499 ntTSL 2 BASIC6.03□□□□□ -1.44
RNF4P78317 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC6.03□□□□□ -1.44
RNF4P78317 OR52K3P-201ENST00000531655 943 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC004217.3-201ENST00000551552 878 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC6.03□□□□□ -1.44
RNF4P78317 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.03□□□□□ -1.44
RNF4P78317 AC023968.1-201ENST00000560719 475 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC6.03□□□□□ -1.44
RNF4P78317 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.03□□□□□ -1.44
RNF4P78317 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC6.03□□□□□ -1.44
RNF4P78317 AC012368.3-201ENST00000604190 219 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC115286.1-201ENST00000604298 434 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC011891.2-201ENST00000604949 397 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC092954.2-201ENST00000609103 430 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC103710.4-201ENST00000609301 899 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC131902.3-201ENST00000611767 581 ntBASIC6.03□□□□□ -1.44
RNF4P78317 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC6.03□□□□□ -1.44
RNF4P78317 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
RNF4P78317 AC006338.1-201ENST00000618453 749 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC241377.1-201ENST00000619797 406 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC073862.4-201ENST00000622982 854 ntBASIC6.03□□□□□ -1.44
RNF4P78317 AC021106.3-201ENST00000623925 531 ntBASIC6.03□□□□□ -1.44
RNF4P78317 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC6.03□□□□□ -1.44
RNF4P78317 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC6.03□□□□□ -1.44
RNF4P78317 AC120349.2-201ENST00000625002 298 ntBASIC6.03□□□□□ -1.44
RNF4P78317 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
RNF4P78317 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
RNF4P78317 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC6.03□□□□□ -1.44
RNF4P78317 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.03□□□□□ -1.44
RNF4P78317 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 169 ms