Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RPL5P22-201ENST00000480199 884 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 RN7SL727P-201ENST00000482164 296 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC5.3□□□□□ -1.56
PTPN9P43378 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC5.3□□□□□ -1.56
PTPN9P43378 RN7SKP260-201ENST00000516907 149 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC5.3□□□□□ -1.56
PTPN9P43378 AC010376.1-201ENST00000522101 334 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 AP001372.4-201ENST00000524889 472 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 AC109635.6-201ENST00000525487 1113 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.3□□□□□ -1.56
PTPN9P43378 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.3□□□□□ -1.56
PTPN9P43378 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.3□□□□□ -1.56
PTPN9P43378 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC5.3□□□□□ -1.56
PTPN9P43378 AC090666.1-201ENST00000578241 445 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.3□□□□□ -1.56
PTPN9P43378 AP000894.4-201ENST00000610185 483 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 BX005214.3-202ENST00000619809 325 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 AP000648.2-201ENST00000624182 404 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
PTPN9P43378 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
PTPN9P43378 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
PTPN9P43378 AC104623.2-202ENST00000623477 4002 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.3□□□□□ -1.56
PTPN9P43378 AL022311.1-201ENST00000623726 19416 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 UGT2B26P-201ENST00000508672 1613 ntBASIC5.3□□□□□ -1.56
PTPN9P43378 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
PTPN9P43378 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTPN9P43378 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTPN9P43378 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTPN9P43378 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.29□□□□□ -1.56
PTPN9P43378 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
PTPN9P43378 GAPDHP15-201ENST00000398586 975 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 SNORA77-201ENST00000408716 125 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 RN7SKP273-201ENST00000411392 314 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 AC007738.1-201ENST00000413892 348 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 AL590806.1-201ENST00000415818 853 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 AC008173.1-201ENST00000418901 264 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 RPL23AP4-201ENST00000427757 463 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.29□□□□□ -1.56
PTPN9P43378 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC5.29□□□□□ -1.56
PTPN9P43378 AC092447.2-201ENST00000435487 669 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.29□□□□□ -1.56
PTPN9P43378 RPS29P9-201ENST00000440360 171 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.29□□□□□ -1.56
PTPN9P43378 AC069540.1-201ENST00000446320 988 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.29□□□□□ -1.56
PTPN9P43378 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC5.29□□□□□ -1.56
PTPN9P43378 snoU109.3-201ENST00000459477 145 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 RPS4XP12-201ENST00000461747 709 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 BX284632.1-201ENST00000478218 541 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC5.29□□□□□ -1.56
PTPN9P43378 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC5.29□□□□□ -1.56
PTPN9P43378 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC5.29□□□□□ -1.56
PTPN9P43378 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.29□□□□□ -1.56
PTPN9P43378 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.29□□□□□ -1.56
PTPN9P43378 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTPN9P43378 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC5.29□□□□□ -1.56
PTPN9P43378 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC5.29□□□□□ -1.56
PTPN9P43378 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.29□□□□□ -1.56
PTPN9P43378 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTPN9P43378 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTPN9P43378 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.29□□□□□ -1.56
PTPN9P43378 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
PTPN9P43378 RN7SL339P-201ENST00000580597 296 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.29□□□□□ -1.56
PTPN9P43378 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.29□□□□□ -1.56
PTPN9P43378 AC011492.1-201ENST00000600023 315 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 AC079610.2-201ENST00000604818 690 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 AC245100.7-201ENST00000609678 442 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC5.29□□□□□ -1.56
PTPN9P43378 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
PTPN9P43378 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC5.29□□□□□ -1.56
PTPN9P43378 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.29□□□□□ -1.56
PTPN9P43378 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.29□□□□□ -1.56
PTPN9P43378 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
PTPN9P43378 AL031595.2-201ENST00000624215 19071 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.29□□□□□ -1.56
PTPN9P43378 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTPN9P43378 AC114947.2-201ENST00000565748 2125 ntBASIC5.29□□□□□ -1.56
PTPN9P43378 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PTPN9P43378 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
PTPN9P43378 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTPN9P43378 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.28□□□□□ -1.56
PTPN9P43378 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTPN9P43378 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PTPN9P43378 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.28□□□□□ -1.56
PTPN9P43378 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
PTPN9P43378 NXF4-202ENST00000416098 1465 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 SNURFL-201ENST00000309296 343 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
PTPN9P43378 RNU6-207P-201ENST00000384137 107 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 RNU6-481P-201ENST00000384194 107 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 RNU6-1320P-201ENST00000390838 107 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 RNU6-1269P-201ENST00000391139 107 ntBASIC5.28□□□□□ -1.56
PTPN9P43378 ATP5HP3-201ENST00000396994 486 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms