Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC034244.2-201ENST00000514668 858 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC4.61□□□□□ -1.67
SOX3P41225 BRD9P1-201ENST00000529855 560 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.61□□□□□ -1.67
SOX3P41225 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.61□□□□□ -1.67
SOX3P41225 AC008033.2-201ENST00000542626 177 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.61□□□□□ -1.67
SOX3P41225 NDUFB4P11-201ENST00000560510 395 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.61□□□□□ -1.67
SOX3P41225 AC233266.2-201ENST00000567067 528 ntBASIC4.61□□□□□ -1.67
SOX3P41225 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.61□□□□□ -1.67
SOX3P41225 MTCO3P22-201ENST00000603219 784 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC087783.2-201ENST00000605070 562 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC005377.1-201ENST00000605126 456 ntBASIC4.61□□□□□ -1.67
SOX3P41225 OR8G7P-201ENST00000616658 848 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC087385.3-201ENST00000620477 187 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AC105105.5-201ENST00000622635 1294 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AP001784.1-201ENST00000624107 428 ntBASIC4.61□□□□□ -1.67
SOX3P41225 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SOX3P41225 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SOX3P41225 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SOX3P41225 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
SOX3P41225 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SOX3P41225 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
SOX3P41225 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.61□□□□□ -1.67
SOX3P41225 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.61□□□□□ -1.67
SOX3P41225 AC053481.2-202ENST00000582394 1500 ntBASIC4.61□□□□□ -1.67
SOX3P41225 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SOX3P41225 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SOX3P41225 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
SOX3P41225 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
SOX3P41225 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 AC132825.1-201ENST00000463573 2247 ntBASIC4.6□□□□□ -1.67
SOX3P41225 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
SOX3P41225 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
SOX3P41225 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
SOX3P41225 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
SOX3P41225 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
SOX3P41225 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.6□□□□□ -1.67
SOX3P41225 RN7SKP103-201ENST00000363848 320 ntBASIC4.6□□□□□ -1.67
SOX3P41225 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
SOX3P41225 AL353692.2-201ENST00000407054 335 ntBASIC4.6□□□□□ -1.67
SOX3P41225 MTCYBP7-201ENST00000419540 1134 ntBASIC4.6□□□□□ -1.67
SOX3P41225 PTP4A1P1-201ENST00000420539 515 ntBASIC4.6□□□□□ -1.67
SOX3P41225 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.6□□□□□ -1.67
SOX3P41225 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.6□□□□□ -1.67
SOX3P41225 TXNP5-201ENST00000441043 315 ntBASIC4.6□□□□□ -1.67
SOX3P41225 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
SOX3P41225 AC112498.1-201ENST00000444401 332 ntBASIC4.6□□□□□ -1.67
SOX3P41225 RPL31P44-201ENST00000447680 377 ntBASIC4.6□□□□□ -1.67
SOX3P41225 RPS3AP53-201ENST00000454716 778 ntBASIC4.6□□□□□ -1.67
SOX3P41225 SEPT7P3-201ENST00000455017 621 ntBASIC4.6□□□□□ -1.67
SOX3P41225 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.6□□□□□ -1.67
SOX3P41225 AC093166.2-201ENST00000455969 1017 ntBASIC4.6□□□□□ -1.67
SOX3P41225 AC108729.2-201ENST00000476543 840 ntBASIC4.6□□□□□ -1.67
SOX3P41225 RPL7P16-201ENST00000479738 738 ntBASIC4.6□□□□□ -1.67
SOX3P41225 AC083982.1-201ENST00000485679 344 ntBASIC4.6□□□□□ -1.67
SOX3P41225 OR11I1P-201ENST00000486033 954 ntBASIC4.6□□□□□ -1.67
SOX3P41225 RN7SL441P-201ENST00000492388 296 ntBASIC4.6□□□□□ -1.67
SOX3P41225 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC4.6□□□□□ -1.67
SOX3P41225 RNU6-1102P-201ENST00000516149 96 ntBASIC4.6□□□□□ -1.67
SOX3P41225 RNA5SP464-201ENST00000516251 108 ntBASIC4.6□□□□□ -1.67
SOX3P41225 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.6□□□□□ -1.67
SOX3P41225 AC021006.3-201ENST00000530771 192 ntBASIC4.6□□□□□ -1.67
SOX3P41225 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.6□□□□□ -1.67
SOX3P41225 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC4.6□□□□□ -1.67
SOX3P41225 DUX4L52-201ENST00000549363 777 ntBASIC4.6□□□□□ -1.67
SOX3P41225 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC4.6□□□□□ -1.67
SOX3P41225 EDDM3DP-201ENST00000554692 434 ntBASIC4.6□□□□□ -1.67
SOX3P41225 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.6□□□□□ -1.67
SOX3P41225 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
SOX3P41225 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.6□□□□□ -1.67
SOX3P41225 FAM106CP-201ENST00000582212 507 ntBASIC4.6□□□□□ -1.67
SOX3P41225 AC005084.1-201ENST00000605160 304 ntBASIC4.6□□□□□ -1.67
SOX3P41225 AC015849.2-201ENST00000605738 409 ntBASIC4.6□□□□□ -1.67
SOX3P41225 FAM25E-202ENST00000608562 189 ntBASIC4.6□□□□□ -1.67
SOX3P41225 MIR8069-1-201ENST00000616627 86 ntBASIC4.6□□□□□ -1.67
SOX3P41225 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.6□□□□□ -1.67
SOX3P41225 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.6□□□□□ -1.67
SOX3P41225 AL158062.1-201ENST00000619632 745 ntBASIC4.6□□□□□ -1.67
SOX3P41225 MIR8069-2-201ENST00000621412 86 ntBASIC4.6□□□□□ -1.67
SOX3P41225 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.6□□□□□ -1.67
SOX3P41225 OR5AC4P-202ENST00000642086 985 ntBASIC4.6□□□□□ -1.67
SOX3P41225 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.6□□□□□ -1.67
SOX3P41225 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.6□□□□□ -1.67
SOX3P41225 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SOX3P41225 AP000542.2-201ENST00000623199 6179 ntBASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms