Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC5.47□□□□□ -1.53
BRCA1P38398 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.47□□□□□ -1.53
BRCA1P38398 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
BRCA1P38398 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.47□□□□□ -1.53
BRCA1P38398 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.47□□□□□ -1.53
BRCA1P38398 PPP1R11P1-201ENST00000486095 376 ntBASIC5.47□□□□□ -1.53
BRCA1P38398 AL121772.2-201ENST00000614331 297 ntBASIC5.47□□□□□ -1.53
BRCA1P38398 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.47□□□□□ -1.53
BRCA1P38398 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.47□□□□□ -1.53
BRCA1P38398 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
BRCA1P38398 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.47□□□□□ -1.53
BRCA1P38398 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
BRCA1P38398 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.47□□□□□ -1.53
BRCA1P38398 AC018628.1-201ENST00000624147 3819 ntBASIC5.47□□□□□ -1.53
BRCA1P38398 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
BRCA1P38398 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
BRCA1P38398 CGA-201ENST00000369582 729 ntTSL 5 BASIC5.47□□□□□ -1.53
BRCA1P38398 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.47□□□□□ -1.53
BRCA1P38398 RPL7P2-201ENST00000427639 268 ntBASIC5.47□□□□□ -1.53
BRCA1P38398 MRPL50P1-201ENST00000431951 384 ntBASIC5.47□□□□□ -1.53
BRCA1P38398 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
BRCA1P38398 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
BRCA1P38398 snoU13.24-201ENST00000458998 104 ntBASIC5.47□□□□□ -1.53
BRCA1P38398 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.47□□□□□ -1.53
BRCA1P38398 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.47□□□□□ -1.53
BRCA1P38398 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC5.47□□□□□ -1.53
BRCA1P38398 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC5.47□□□□□ -1.53
BRCA1P38398 RN7SL435P-201ENST00000584418 282 ntBASIC5.47□□□□□ -1.53
BRCA1P38398 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.47□□□□□ -1.53
BRCA1P38398 TMEM30CP-203ENST00000637814 1035 ntBASIC5.47□□□□□ -1.53
BRCA1P38398 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
BRCA1P38398 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
BRCA1P38398 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
BRCA1P38398 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
BRCA1P38398 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.53
BRCA1P38398 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
BRCA1P38398 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
BRCA1P38398 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
BRCA1P38398 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
BRCA1P38398 MIR3065-201ENST00000390137 79 ntBASIC5.46□□□□□ -1.54
BRCA1P38398 ARAFP2-201ENST00000440565 559 ntBASIC5.46□□□□□ -1.54
BRCA1P38398 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.46□□□□□ -1.54
BRCA1P38398 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.46□□□□□ -1.54
BRCA1P38398 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
BRCA1P38398 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
BRCA1P38398 AK4P6-201ENST00000505168 528 ntBASIC5.46□□□□□ -1.54
BRCA1P38398 FKBP1BP1-201ENST00000553366 325 ntBASIC5.46□□□□□ -1.54
BRCA1P38398 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.46□□□□□ -1.54
BRCA1P38398 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
BRCA1P38398 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.46□□□□□ -1.54
BRCA1P38398 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.46□□□□□ -1.54
BRCA1P38398 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.46□□□□□ -1.54
BRCA1P38398 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
BRCA1P38398 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
BRCA1P38398 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.45□□□□□ -1.54
BRCA1P38398 RN7SKP235-201ENST00000410662 305 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 AC091390.3-201ENST00000426478 338 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC5.45□□□□□ -1.54
BRCA1P38398 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.45□□□□□ -1.54
BRCA1P38398 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.45□□□□□ -1.54
BRCA1P38398 OR52E3P-201ENST00000452083 936 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 AC026403.1-201ENST00000518938 295 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 OR5D2P-201ENST00000524390 911 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 AL121834.1-201ENST00000572284 509 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 AC096577.2-201ENST00000611455 153 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 AC015908.5-201ENST00000623289 343 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
BRCA1P38398 AC099654.3-201ENST00000447087 1546 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
BRCA1P38398 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.45□□□□□ -1.54
BRCA1P38398 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.45□□□□□ -1.54
BRCA1P38398 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 AP001157.1-201ENST00000550837 2339 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.45□□□□□ -1.54
BRCA1P38398 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.45□□□□□ -1.54
BRCA1P38398 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.45□□□□□ -1.54
BRCA1P38398 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
BRCA1P38398 RNA5SP130-201ENST00000364431 114 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 RN7SKP159-201ENST00000410657 292 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 SNRPFP1-201ENST00000414761 252 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.45□□□□□ -1.54
BRCA1P38398 COX6B1P7-201ENST00000430845 235 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.45□□□□□ -1.54
BRCA1P38398 RNA5SP49-201ENST00000516450 115 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.45□□□□□ -1.54
BRCA1P38398 MIR3944-201ENST00000581277 108 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 AC015967.1-201ENST00000619893 476 ntBASIC5.45□□□□□ -1.54
BRCA1P38398 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.45□□□□□ -1.54
BRCA1P38398 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
BRCA1P38398 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.45□□□□□ -1.54
BRCA1P38398 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
BRCA1P38398 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC5.45□□□□□ -1.54
BRCA1P38398 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.45□□□□□ -1.54
BRCA1P38398 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
BRCA1P38398 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC5.44□□□□□ -1.54
BRCA1P38398 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
BRCA1P38398 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC5.44□□□□□ -1.54
BRCA1P38398 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
BRCA1P38398 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
BRCA1P38398 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms