Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HSPE1P23-201ENST00000509838 286 ntBASIC5.56□□□□□ -1.52
MSX2P35548 BTG4P1-201ENST00000510421 183 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AC010285.3-201ENST00000511668 676 ntBASIC5.56□□□□□ -1.52
MSX2P35548 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX2P35548 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX2P35548 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
MSX2P35548 IGHVIII-38-1-201ENST00000521454 282 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AC135983.3-201ENST00000528049 1226 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX2P35548 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX2P35548 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX2P35548 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX2P35548 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX2P35548 AP005205.1-201ENST00000563503 508 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX2P35548 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX2P35548 MTCO3P24-201ENST00000572729 782 ntBASIC5.56□□□□□ -1.52
MSX2P35548 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC5.56□□□□□ -1.52
MSX2P35548 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX2P35548 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSX2P35548 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.56□□□□□ -1.52
MSX2P35548 U73023.1-201ENST00000603134 700 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC5.56□□□□□ -1.52
MSX2P35548 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.56□□□□□ -1.52
MSX2P35548 MIR6780B-201ENST00000610307 79 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AC068726.1-201ENST00000610993 341 ntBASIC5.56□□□□□ -1.52
MSX2P35548 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AC008443.7-201ENST00000622195 246 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AP003400.5-201ENST00000624827 617 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC5.56□□□□□ -1.52
MSX2P35548 AP000473.2-201ENST00000602659 1537 ntBASIC5.56□□□□□ -1.52
MSX2P35548 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.56□□□□□ -1.52
MSX2P35548 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
MSX2P35548 AC018809.2-201ENST00000602436 3823 ntBASIC5.56□□□□□ -1.52
MSX2P35548 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
MSX2P35548 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSX2P35548 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSX2P35548 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSX2P35548 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSX2P35548 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.55□□□□□ -1.52
MSX2P35548 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.55□□□□□ -1.52
MSX2P35548 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.55□□□□□ -1.52
MSX2P35548 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.55□□□□□ -1.52
MSX2P35548 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
MSX2P35548 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.55□□□□□ -1.52
MSX2P35548 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
MSX2P35548 IL6STP1-201ENST00000346911 1020 ntBASIC5.55□□□□□ -1.52
MSX2P35548 RNU4-21P-201ENST00000362802 126 ntBASIC5.55□□□□□ -1.52
MSX2P35548 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
MSX2P35548 U3.28-201ENST00000391249 210 ntBASIC5.55□□□□□ -1.52
MSX2P35548 ATP5HP3-201ENST00000396994 486 ntBASIC5.55□□□□□ -1.52
MSX2P35548 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
MSX2P35548 HSPD1P16-201ENST00000402302 394 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AL033519.1-201ENST00000407266 307 ntBASIC5.55□□□□□ -1.52
MSX2P35548 RN7SKP279-201ENST00000411383 298 ntBASIC5.55□□□□□ -1.52
MSX2P35548 OR8G2P-201ENST00000412796 908 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 IPPKP1-201ENST00000422501 768 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 CCNB1IP1P2-201ENST00000432876 818 ntBASIC5.55□□□□□ -1.52
MSX2P35548 MTCO1P52-201ENST00000433928 531 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AL022324.2-201ENST00000434827 780 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AC096775.1-201ENST00000437724 448 ntBASIC5.55□□□□□ -1.52
MSX2P35548 PCNPP2-201ENST00000441651 455 ntBASIC5.55□□□□□ -1.52
MSX2P35548 HMGN1P32-201ENST00000441744 256 ntBASIC5.55□□□□□ -1.52
MSX2P35548 RPL23AP76-201ENST00000441860 458 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC5.55□□□□□ -1.52
MSX2P35548 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC5.55□□□□□ -1.52
MSX2P35548 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.55□□□□□ -1.52
MSX2P35548 KF459542.1-201ENST00000450908 553 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC5.55□□□□□ -1.52
MSX2P35548 ZNF114P1-201ENST00000453500 292 ntBASIC5.55□□□□□ -1.52
MSX2P35548 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 AC099670.1-201ENST00000455141 783 ntBASIC5.55□□□□□ -1.52
MSX2P35548 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.55□□□□□ -1.52
MSX2P35548 RPL7P1-201ENST00000468161 747 ntBASIC5.55□□□□□ -1.52
MSX2P35548 RPL7P9-201ENST00000468715 747 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 GLUD1P3-202ENST00000508551 200 ntBASIC5.55□□□□□ -1.52
MSX2P35548 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.55□□□□□ -1.52
MSX2P35548 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC5.55□□□□□ -1.52
MSX2P35548 HNRNPKP5-201ENST00000515300 253 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.55□□□□□ -1.52
MSX2P35548 OR5AZ1P-201ENST00000527448 943 ntBASIC5.55□□□□□ -1.52
MSX2P35548 OR8G3P-201ENST00000533406 921 ntBASIC5.55□□□□□ -1.52
MSX2P35548 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC5.55□□□□□ -1.52
MSX2P35548 AC136619.2-201ENST00000563361 631 ntBASIC5.55□□□□□ -1.52
MSX2P35548 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.55□□□□□ -1.52
MSX2P35548 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.55□□□□□ -1.52
MSX2P35548 AC091135.1-201ENST00000585943 307 ntBASIC5.55□□□□□ -1.52
MSX2P35548 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.55□□□□□ -1.52
MSX2P35548 MTCYBP22-201ENST00000603788 447 ntBASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms