Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 AC079075.1-201ENST00000559543 878 ntBASIC3.6□□□□□ -1.83
HLA-DMBP28068 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 AC130352.1-201ENST00000602979 661 ntBASIC3.6□□□□□ -1.83
HLA-DMBP28068 AC087468.1-201ENST00000604365 630 ntBASIC3.6□□□□□ -1.83
HLA-DMBP28068 AL121932.1-201ENST00000605542 214 ntBASIC3.6□□□□□ -1.83
HLA-DMBP28068 COX6CP4-201ENST00000605798 228 ntBASIC3.6□□□□□ -1.83
HLA-DMBP28068 FAM25E-202ENST00000608562 189 ntBASIC3.6□□□□□ -1.83
HLA-DMBP28068 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 AL359757.1-201ENST00000623176 255 ntBASIC3.6□□□□□ -1.83
HLA-DMBP28068 AC091953.3-201ENST00000623220 236 ntBASIC3.6□□□□□ -1.83
HLA-DMBP28068 AC112694.2-201ENST00000623697 768 ntBASIC3.6□□□□□ -1.83
HLA-DMBP28068 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DMBP28068 GHR-213ENST00000622294 4312 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 AC108751.5-201ENST00000492880 1336 ntBASIC3.6□□□□□ -1.83
HLA-DMBP28068 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DMBP28068 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HLA-DMBP28068 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
HLA-DMBP28068 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 CUL4AP1-201ENST00000514750 1863 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 RN7SKP95-201ENST00000362860 303 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DMBP28068 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 RNU6-1320P-201ENST00000390838 107 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 RNU6-1269P-201ENST00000391139 107 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 U3.30-201ENST00000391308 210 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DMBP28068 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DMBP28068 LAP3P1-201ENST00000403648 294 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 AL589994.1-201ENST00000404962 340 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 RNA5SP146-201ENST00000410743 123 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 ATG4AP1-201ENST00000416893 538 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 AL645608.4-201ENST00000423619 154 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 OR2B7P-201ENST00000429302 934 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 RPS26P2-201ENST00000440331 348 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 AC112498.1-201ENST00000444401 332 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 Z80107.2-201ENST00000445127 392 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 MRPL48P1-201ENST00000445390 636 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DMBP28068 RNU6-599P-201ENST00000459383 107 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 RNU6-1193P-201ENST00000459461 107 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DMBP28068 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 STMN1P2-201ENST00000508435 439 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 HMGB3P13-201ENST00000511263 607 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 CDH12P4-201ENST00000517835 295 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 CDH12P3-201ENST00000517935 295 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 CDH12P1-201ENST00000518435 295 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 PDCD5P1-201ENST00000543528 309 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 DUX4L52-201ENST00000549363 777 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 AC133555.2-201ENST00000550213 292 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 MIR4675-201ENST00000577898 77 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 AC020910.3-201ENST00000603701 874 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 AC067838.1-201ENST00000606064 577 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 AC007497.1-201ENST00000610421 561 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DMBP28068 AL158062.1-201ENST00000619632 745 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 RNU6-368P-201ENST00000620928 107 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 RNU6-538P-201ENST00000622329 107 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 AP003499.2-201ENST00000624100 483 ntBASIC3.59□□□□□ -1.83
HLA-DMBP28068 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DMBP28068 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC3.59□□□□□ -1.83
HLA-DMBP28068 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HLA-DMBP28068 IRF5P1-201ENST00000504852 2164 ntBASIC3.59□□□□□ -1.84
HLA-DMBP28068 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
HLA-DMBP28068 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC3.59□□□□□ -1.84
HLA-DMBP28068 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
HLA-DMBP28068 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HLA-DMBP28068 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.58□□□□□ -1.84
HLA-DMBP28068 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms