Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.55□□□□□ -1.52
BDNFP23560 AL162431.4-201ENST00000604674 411 ntBASIC5.55□□□□□ -1.52
BDNFP23560 AC099494.2-201ENST00000623371 978 ntBASIC5.55□□□□□ -1.52
BDNFP23560 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC5.55□□□□□ -1.52
BDNFP23560 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
BDNFP23560 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
BDNFP23560 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.55□□□□□ -1.52
BDNFP23560 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
BDNFP23560 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.55□□□□□ -1.52
BDNFP23560 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
BDNFP23560 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
BDNFP23560 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC5.55□□□□□ -1.52
BDNFP23560 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
BDNFP23560 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.54□□□□□ -1.52
BDNFP23560 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC5.54□□□□□ -1.52
BDNFP23560 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.54□□□□□ -1.52
BDNFP23560 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.54□□□□□ -1.52
BDNFP23560 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.54□□□□□ -1.52
BDNFP23560 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
BDNFP23560 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 SNORA58B-201ENST00000364259 136 ntBASIC5.54□□□□□ -1.52
BDNFP23560 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.54□□□□□ -1.52
BDNFP23560 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
BDNFP23560 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.54□□□□□ -1.52
BDNFP23560 RNU2-65P-201ENST00000410162 185 ntBASIC5.54□□□□□ -1.52
BDNFP23560 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.54□□□□□ -1.52
BDNFP23560 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.54□□□□□ -1.52
BDNFP23560 AC007394.1-201ENST00000421941 531 ntBASIC5.54□□□□□ -1.52
BDNFP23560 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.54□□□□□ -1.52
BDNFP23560 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.54□□□□□ -1.52
BDNFP23560 AC006455.6-201ENST00000426192 893 ntBASIC5.54□□□□□ -1.52
BDNFP23560 HMGN2P27-201ENST00000427352 270 ntBASIC5.54□□□□□ -1.52
BDNFP23560 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC5.54□□□□□ -1.52
BDNFP23560 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 TRAPPC2P9-201ENST00000434556 343 ntBASIC5.54□□□□□ -1.52
BDNFP23560 CLUHP1-201ENST00000435012 1190 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC092447.2-201ENST00000435487 669 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.54□□□□□ -1.52
BDNFP23560 GAPDHP58-201ENST00000438477 1006 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.54□□□□□ -1.52
BDNFP23560 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.54□□□□□ -1.52
BDNFP23560 AC108729.2-201ENST00000476543 840 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC093270.2-201ENST00000486157 792 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.54□□□□□ -1.52
BDNFP23560 AC004453.1-201ENST00000487895 408 ntBASIC5.54□□□□□ -1.52
BDNFP23560 FTH1P24-201ENST00000503502 462 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.54□□□□□ -1.52
BDNFP23560 EIF3KP3-201ENST00000514461 639 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC5.54□□□□□ -1.52
BDNFP23560 OR5AK3P-201ENST00000527486 1297 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.54□□□□□ -1.52
BDNFP23560 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 AL161713.1-201ENST00000555538 145 ntBASIC5.54□□□□□ -1.52
BDNFP23560 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.54□□□□□ -1.52
BDNFP23560 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 MIR4443-201ENST00000585052 53 ntBASIC5.54□□□□□ -1.52
BDNFP23560 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.54□□□□□ -1.52
BDNFP23560 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.54□□□□□ -1.52
BDNFP23560 AL671309.1-201ENST00000603750 544 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC009597.2-201ENST00000604659 592 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC009163.6-201ENST00000612367 342 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC007786.3-201ENST00000615154 596 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC245389.2-201ENST00000616023 576 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC243756.2-201ENST00000618406 463 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC242843.1-201ENST00000618702 573 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC000123.2-201ENST00000623124 461 ntBASIC5.54□□□□□ -1.52
BDNFP23560 LINC01739-205ENST00000641890 573 ntBASIC5.54□□□□□ -1.52
BDNFP23560 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.54□□□□□ -1.52
BDNFP23560 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
BDNFP23560 MTCO1P18-201ENST00000455518 1419 ntBASIC5.54□□□□□ -1.52
BDNFP23560 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
BDNFP23560 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.54□□□□□ -1.52
BDNFP23560 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
BDNFP23560 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
BDNFP23560 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
BDNFP23560 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.53□□□□□ -1.52
BDNFP23560 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
BDNFP23560 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
BDNFP23560 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
BDNFP23560 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.53□□□□□ -1.52
BDNFP23560 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
BDNFP23560 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
BDNFP23560 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
BDNFP23560 OR52B1P-201ENST00000316506 909 ntBASIC5.53□□□□□ -1.52
BDNFP23560 RNA5SP90-201ENST00000364801 99 ntBASIC5.53□□□□□ -1.52
BDNFP23560 AL645927.1-201ENST00000396783 406 ntBASIC5.53□□□□□ -1.52
BDNFP23560 HNRNPDP2-201ENST00000406475 478 ntBASIC5.53□□□□□ -1.52
BDNFP23560 MTND2P15-201ENST00000418575 892 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms