Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSH3P20585 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSH3P20585 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.93□□□□□ -1.62
MSH3P20585 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
MSH3P20585 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSH3P20585 AL589647.1-201ENST00000402485 466 ntBASIC4.93□□□□□ -1.62
MSH3P20585 RN7SKP97-201ENST00000410966 333 ntBASIC4.93□□□□□ -1.62
MSH3P20585 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.93□□□□□ -1.62
MSH3P20585 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.93□□□□□ -1.62
MSH3P20585 AF186996.5-201ENST00000418098 904 ntBASIC4.93□□□□□ -1.62
MSH3P20585 OR5M12P-201ENST00000423388 929 ntBASIC4.93□□□□□ -1.62
MSH3P20585 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.93□□□□□ -1.62
MSH3P20585 MORF4L1P7-201ENST00000426038 703 ntBASIC4.93□□□□□ -1.62
MSH3P20585 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.93□□□□□ -1.62
MSH3P20585 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.93□□□□□ -1.62
MSH3P20585 MTND2P21-201ENST00000436242 1042 ntBASIC4.93□□□□□ -1.62
MSH3P20585 PRPF38AP2-201ENST00000438179 851 ntBASIC4.93□□□□□ -1.62
MSH3P20585 ELOCP3-201ENST00000439303 348 ntBASIC4.93□□□□□ -1.62
MSH3P20585 AL450023.3-201ENST00000440592 271 ntBASIC4.93□□□□□ -1.62
MSH3P20585 AL513321.1-201ENST00000441175 761 ntBASIC4.93□□□□□ -1.62
MSH3P20585 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.93□□□□□ -1.62
MSH3P20585 AL589765.3-201ENST00000446084 462 ntBASIC4.93□□□□□ -1.62
MSH3P20585 BUD31P2-201ENST00000449374 300 ntBASIC4.93□□□□□ -1.62
MSH3P20585 RBMY2TP-201ENST00000451162 947 ntBASIC4.93□□□□□ -1.62
MSH3P20585 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.93□□□□□ -1.62
MSH3P20585 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.93□□□□□ -1.62
MSH3P20585 GYG1P1-201ENST00000460864 698 ntBASIC4.93□□□□□ -1.62
MSH3P20585 AC092905.1-201ENST00000467527 949 ntBASIC4.93□□□□□ -1.62
MSH3P20585 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSH3P20585 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.93□□□□□ -1.62
MSH3P20585 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.93□□□□□ -1.62
MSH3P20585 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.93□□□□□ -1.62
MSH3P20585 AC016550.3-201ENST00000515706 767 ntBASIC4.93□□□□□ -1.62
MSH3P20585 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.93□□□□□ -1.62
MSH3P20585 AC103833.1-201ENST00000517442 172 ntBASIC4.93□□□□□ -1.62
MSH3P20585 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.93□□□□□ -1.62
MSH3P20585 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.93□□□□□ -1.62
MSH3P20585 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.93□□□□□ -1.62
MSH3P20585 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC4.93□□□□□ -1.62
MSH3P20585 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
MSH3P20585 AC116553.2-201ENST00000564203 463 ntBASIC4.93□□□□□ -1.62
MSH3P20585 TVP23CP2-201ENST00000571473 623 ntBASIC4.93□□□□□ -1.62
MSH3P20585 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
MSH3P20585 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.93□□□□□ -1.62
MSH3P20585 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC4.93□□□□□ -1.62
MSH3P20585 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
MSH3P20585 MEMO1P5-201ENST00000604810 406 ntBASIC4.93□□□□□ -1.62
MSH3P20585 AC004775.1-201ENST00000607389 753 ntBASIC4.93□□□□□ -1.62
MSH3P20585 AL592494.3-201ENST00000609485 464 ntBASIC4.93□□□□□ -1.62
MSH3P20585 AC097460.3-201ENST00000623099 442 ntBASIC4.93□□□□□ -1.62
MSH3P20585 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
MSH3P20585 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.93□□□□□ -1.62
MSH3P20585 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
MSH3P20585 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
MSH3P20585 AL672167.1-204ENST00000641875 3017 ntBASIC4.93□□□□□ -1.62
MSH3P20585 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
MSH3P20585 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
MSH3P20585 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.93□□□□□ -1.62
MSH3P20585 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
MSH3P20585 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.92□□□□□ -1.62
MSH3P20585 AL022393.1-201ENST00000625142 1677 ntBASIC4.92□□□□□ -1.62
MSH3P20585 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSH3P20585 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.92□□□□□ -1.62
MSH3P20585 STX3-208ENST00000641815 3236 ntBASIC4.92□□□□□ -1.62
MSH3P20585 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSH3P20585 AC011447.7-201ENST00000624228 1590 ntBASIC4.92□□□□□ -1.62
MSH3P20585 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSH3P20585 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.92□□□□□ -1.62
MSH3P20585 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSH3P20585 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
MSH3P20585 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
MSH3P20585 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
MSH3P20585 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSH3P20585 SNORA63.3-201ENST00000362682 132 ntBASIC4.92□□□□□ -1.62
MSH3P20585 SNORA73.1-201ENST00000363107 205 ntBASIC4.92□□□□□ -1.62
MSH3P20585 GCNT6-201ENST00000379591 934 ntBASIC4.92□□□□□ -1.62
MSH3P20585 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
MSH3P20585 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSH3P20585 AL645733.1-201ENST00000402250 217 ntBASIC4.92□□□□□ -1.62
MSH3P20585 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSH3P20585 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.92□□□□□ -1.62
MSH3P20585 AL354692.1-201ENST00000423044 315 ntBASIC4.92□□□□□ -1.62
MSH3P20585 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.92□□□□□ -1.62
MSH3P20585 AL606490.7-201ENST00000433136 191 ntBASIC4.92□□□□□ -1.62
MSH3P20585 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.92□□□□□ -1.62
MSH3P20585 CCRL1P1-201ENST00000449542 1053 ntBASIC4.92□□□□□ -1.62
MSH3P20585 AC002553.2-201ENST00000453217 340 ntBASIC4.92□□□□□ -1.62
MSH3P20585 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.92□□□□□ -1.62
MSH3P20585 RNA5SP103-201ENST00000459503 118 ntBASIC4.92□□□□□ -1.62
MSH3P20585 AC104629.2-201ENST00000468627 598 ntBASIC4.92□□□□□ -1.62
MSH3P20585 RN7SL97P-201ENST00000486780 299 ntBASIC4.92□□□□□ -1.62
MSH3P20585 HMGB3P16-201ENST00000508037 287 ntBASIC4.92□□□□□ -1.62
MSH3P20585 MTATP6P9-201ENST00000515039 680 ntBASIC4.92□□□□□ -1.62
MSH3P20585 SNORA76.2-201ENST00000517095 137 ntBASIC4.92□□□□□ -1.62
MSH3P20585 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.92□□□□□ -1.62
MSH3P20585 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.92□□□□□ -1.62
MSH3P20585 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
MSH3P20585 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
MSH3P20585 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.92□□□□□ -1.62
MSH3P20585 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms