Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL6A3P12111 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.51□□□□□ -1.69
COL6A3P12111 AC027455.1-201ENST00000574104 594 ntBASIC4.51□□□□□ -1.69
COL6A3P12111 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.51□□□□□ -1.69
COL6A3P12111 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.51□□□□□ -1.69
COL6A3P12111 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL6A3P12111 AC068769.1-201ENST00000474767 2426 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL6A3P12111 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL6A3P12111 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL6A3P12111 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC4.5□□□□□ -1.69
COL6A3P12111 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL6A3P12111 AC115285.1-201ENST00000424879 736 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.5□□□□□ -1.69
COL6A3P12111 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.5□□□□□ -1.69
COL6A3P12111 SETP14-201ENST00000497538 873 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 RFPL4AP5-201ENST00000514977 504 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 AC060780.2-201ENST00000589047 198 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 AC104763.2-201ENST00000604179 382 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.5□□□□□ -1.69
COL6A3P12111 LINC01808-202ENST00000641680 1116 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 MAPK10-328ENST00000641553 4009 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL6A3P12111 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC4.5□□□□□ -1.69
COL6A3P12111 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
COL6A3P12111 ADGRB3-202ENST00000370598 6010 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL6A3P12111 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.5□□□□□ -1.69
COL6A3P12111 MTCO1P24-201ENST00000515438 1558 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL6A3P12111 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL6A3P12111 TET1P1-201ENST00000426627 2301 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC4.5□□□□□ -1.69
COL6A3P12111 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC4.5□□□□□ -1.69
COL6A3P12111 RPL7P44-201ENST00000424827 742 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL6A3P12111 RPL7P23-201ENST00000493874 747 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 AL139099.1-201ENST00000497398 403 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.5□□□□□ -1.69
COL6A3P12111 ENPP7P11-201ENST00000505915 627 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.5□□□□□ -1.69
COL6A3P12111 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.5□□□□□ -1.69
COL6A3P12111 RPL12P22-201ENST00000519073 490 ntBASIC4.5□□□□□ -1.69
COL6A3P12111 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.5□□□□□ -1.69
COL6A3P12111 UTY-215ENST00000618474 6277 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL6A3P12111 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC4.5□□□□□ -1.69
COL6A3P12111 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL6A3P12111 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC4.5□□□□□ -1.69
COL6A3P12111 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
COL6A3P12111 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.5□□□□□ -1.69
COL6A3P12111 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL6A3P12111 AC093719.1-202ENST00000392735 373 ntBASIC4.49□□□□□ -1.69
COL6A3P12111 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.49□□□□□ -1.69
COL6A3P12111 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.49□□□□□ -1.69
COL6A3P12111 RN7SL807P-201ENST00000470923 297 ntBASIC4.49□□□□□ -1.69
COL6A3P12111 AC110792.1-201ENST00000491826 472 ntBASIC4.49□□□□□ -1.69
COL6A3P12111 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.49□□□□□ -1.69
COL6A3P12111 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.49□□□□□ -1.69
COL6A3P12111 OR7A19P-201ENST00000608051 733 ntBASIC4.49□□□□□ -1.69
COL6A3P12111 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.49□□□□□ -1.69
COL6A3P12111 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC4.49□□□□□ -1.69
COL6A3P12111 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.49□□□□□ -1.69
COL6A3P12111 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL6A3P12111 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL6A3P12111 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
COL6A3P12111 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL6A3P12111 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL6A3P12111 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL6A3P12111 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC4.49□□□□□ -1.69
COL6A3P12111 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL6A3P12111 OR11H4-201ENST00000315409 1082 ntBASIC4.49□□□□□ -1.69
COL6A3P12111 AC004980.3-201ENST00000447046 365 ntBASIC4.49□□□□□ -1.69
COL6A3P12111 ISCUP1-201ENST00000454451 448 ntBASIC4.49□□□□□ -1.69
COL6A3P12111 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.49□□□□□ -1.69
COL6A3P12111 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.49□□□□□ -1.69
COL6A3P12111 AC116553.2-201ENST00000564203 463 ntBASIC4.49□□□□□ -1.69
COL6A3P12111 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC4.49□□□□□ -1.69
COL6A3P12111 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.49□□□□□ -1.69
COL6A3P12111 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
COL6A3P12111 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.49□□□□□ -1.69
COL6A3P12111 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.49□□□□□ -1.69
COL6A3P12111 DICER1-204ENST00000527414 6179 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL6A3P12111 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL6A3P12111 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.49□□□□□ -1.69
COL6A3P12111 NFIB-205ENST00000380959 8198 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL6A3P12111 LINC00622-201ENST00000562811 1570 ntBASIC4.49□□□□□ -1.69
COL6A3P12111 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.49□□□□□ -1.69
COL6A3P12111 MIR1251-201ENST00000408552 70 ntBASIC4.49□□□□□ -1.69
COL6A3P12111 Y_RNA.719-201ENST00000517156 106 ntBASIC4.49□□□□□ -1.69
COL6A3P12111 ABBA01000935.2-201ENST00000637477 838 ntBASIC4.49□□□□□ -1.69
COL6A3P12111 ERCC6-202ENST00000374127 1782 ntBASIC4.49□□□□□ -1.69
COL6A3P12111 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC4.48□□□□□ -1.69
COL6A3P12111 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
COL6A3P12111 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms