Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AP003730.1-201ENST00000524605 285 ntBASIC4.24□□□□□ -1.73
SPTA1P02549 AL049830.4-201ENST00000555149 351 ntBASIC4.24□□□□□ -1.73
SPTA1P02549 MIR4513-201ENST00000581077 86 ntBASIC4.24□□□□□ -1.73
SPTA1P02549 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.24□□□□□ -1.73
SPTA1P02549 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.24□□□□□ -1.73
SPTA1P02549 FAM27B-201ENST00000610601 213 ntBASIC4.24□□□□□ -1.73
SPTA1P02549 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
SPTA1P02549 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.24□□□□□ -1.73
SPTA1P02549 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC4.23□□□□□ -1.73
SPTA1P02549 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
SPTA1P02549 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.23□□□□□ -1.73
SPTA1P02549 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SPTA1P02549 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
SPTA1P02549 AC017019.1-201ENST00000426129 261 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SPTA1P02549 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.23□□□□□ -1.73
SPTA1P02549 AL500522.2-201ENST00000448562 343 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SPTA1P02549 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.23□□□□□ -1.73
SPTA1P02549 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC4.23□□□□□ -1.73
SPTA1P02549 AL133243.1-201ENST00000614487 366 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 SCARNA15.3-201ENST00000626315 122 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 SCARNA4.1-201ENST00000628597 123 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
SPTA1P02549 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
SPTA1P02549 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
SPTA1P02549 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
SPTA1P02549 AP001029.2-203ENST00000589795 4910 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.23□□□□□ -1.73
SPTA1P02549 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SPTA1P02549 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
SPTA1P02549 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
SPTA1P02549 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
SPTA1P02549 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SPTA1P02549 AC140479.2-201ENST00000421567 3130 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.23□□□□□ -1.73
SPTA1P02549 RN7SKP284-201ENST00000411002 343 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 AC053481.1-201ENST00000467217 306 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 RN7SL132P-201ENST00000478131 296 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 AC005412.2-201ENST00000492004 341 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.23□□□□□ -1.73
SPTA1P02549 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.23□□□□□ -1.73
SPTA1P02549 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SPTA1P02549 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SPTA1P02549 AC027369.5-201ENST00000533838 755 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 AP000619.3-201ENST00000535634 1127 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 CCNG2P1-201ENST00000549521 1000 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 AC106782.4-201ENST00000568264 210 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.23□□□□□ -1.73
SPTA1P02549 AC005255.1-201ENST00000593748 216 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.23□□□□□ -1.73
SPTA1P02549 MIR6133-201ENST00000617057 108 ntBASIC4.23□□□□□ -1.73
SPTA1P02549 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SPTA1P02549 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SPTA1P02549 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC4.23□□□□□ -1.73
SPTA1P02549 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SPTA1P02549 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.22□□□□□ -1.73
SPTA1P02549 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SPTA1P02549 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
SPTA1P02549 AC006042.3-201ENST00000454684 1469 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
SPTA1P02549 AC011998.1-201ENST00000433403 117 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 AL035246.1-201ENST00000433554 1255 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 AC007389.2-201ENST00000434630 306 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 H2AFZP5-201ENST00000446960 382 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 AC007967.1-201ENST00000455422 1159 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 AC105137.1-201ENST00000484355 562 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 AC026427.2-201ENST00000506228 536 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.22□□□□□ -1.73
SPTA1P02549 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SPTA1P02549 AC091979.2-201ENST00000607514 214 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 AC243960.7-201ENST00000623532 707 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 ZNF137P-201ENST00000456718 1920 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
SPTA1P02549 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SPTA1P02549 AP001002.1-201ENST00000625148 1513 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SPTA1P02549 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
SPTA1P02549 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.22□□□□□ -1.73
SPTA1P02549 AC097374.1-203ENST00000400783 485 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 TCEA1P4-201ENST00000415066 844 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 AL356276.2-201ENST00000435919 558 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.22□□□□□ -1.73
SPTA1P02549 RN7SKP248-201ENST00000516278 305 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 PAICSP4-201ENST00000517543 1253 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SPTA1P02549 SNORA74C-1-201ENST00000580726 201 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC4.22□□□□□ -1.73
SPTA1P02549 AL451086.1-201ENST00000605596 223 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 AC140479.6-201ENST00000633535 357 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 AC012442.3-202ENST00000636742 206 ntBASIC4.22□□□□□ -1.73
SPTA1P02549 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SPTA1P02549 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.22□□□□□ -1.73
SPTA1P02549 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.21□□□□□ -1.73
SPTA1P02549 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
SPTA1P02549 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.21□□□□□ -1.73
SPTA1P02549 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
SPTA1P02549 DOCK11P1-201ENST00000553480 5932 ntBASIC4.21□□□□□ -1.73
SPTA1P02549 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms