Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC010487.1-201ENST00000594408 1172 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 OR7A19P-201ENST00000608051 733 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AC073342.3-201ENST00000624211 193 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AC092159.4-201ENST00000624944 550 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 AL445487.1-201ENST00000415694 1580 ntBASIC4.77□□□□□ -1.65
LHX3Q9UBR4 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.77□□□□□ -1.65
LHX3Q9UBR4 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AC079741.1-201ENST00000321498 212 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 MIR298-201ENST00000401212 88 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AP000580.1-201ENST00000404439 358 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AL031119.1-201ENST00000404707 1879 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 RN7SKP106-201ENST00000410832 272 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 H2AFZP5-201ENST00000446960 382 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 MTND3P4-201ENST00000453537 303 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AC010326.1-201ENST00000462726 602 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AC007686.1-201ENST00000488511 463 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 RPL36AP41-201ENST00000493820 306 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AC008897.1-201ENST00000494006 347 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AC025164.1-201ENST00000496249 478 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 RNA5SP303-201ENST00000516192 130 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AC018442.3-201ENST00000523025 183 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 EIF4A2P3-201ENST00000525903 1055 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AP006289.1-201ENST00000538089 277 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 BNIP3P1-201ENST00000547295 580 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 MIR4700-201ENST00000578311 74 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AC025574.1-201ENST00000554784 1653 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 AL022393.1-201ENST00000625142 1677 ntBASIC4.76□□□□□ -1.65
LHX3Q9UBR4 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
LHX3Q9UBR4 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC012618.3-205ENST00000637896 1496 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AL049697.2-201ENST00000403708 294 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 RN7SKP267-201ENST00000410381 285 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 RNU2-50P-201ENST00000410494 143 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AL445528.1-201ENST00000426330 420 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC114878.1-201ENST00000441166 358 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 CEACAMP6-201ENST00000452007 574 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC020890.1-201ENST00000491837 504 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC087888.1-201ENST00000550884 1254 ntBASIC4.75□□□□□ -1.65
LHX3Q9UBR4 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.75□□□□□ -1.65
LHX3Q9UBR4 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms