Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 AC007938.2-201ENST00000604666 2634 ntBASIC5.73□□□□□ -1.49
TDP1Q9NUW8 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.73□□□□□ -1.49
TDP1Q9NUW8 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 RNA5SP507-201ENST00000363603 121 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 RNA5SP514-201ENST00000363717 111 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 RNU6-413P-201ENST00000384115 107 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 MIR320B1-201ENST00000390209 79 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 RNA5SP339-201ENST00000390987 122 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 SKINT1L-201ENST00000401057 817 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AL079342.2-201ENST00000403367 482 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 RN7SKP273-201ENST00000411392 314 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 METTL15P3-201ENST00000415522 1221 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 LINC01881-201ENST00000416103 412 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AC007161.1-204ENST00000423039 460 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 RPL7P29-201ENST00000437151 728 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 KATNBL1P3-201ENST00000443475 909 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AURKAPS1-201ENST00000451805 1212 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 ATP5A1P7-201ENST00000453978 1279 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 XACT-201ENST00000468762 497 ntTSL 5 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AC037198.2-201ENST00000478845 733 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 RPL23AP37-201ENST00000479658 549 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 RPL15P21-201ENST00000495592 567 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AC113347.3-201ENST00000509113 148 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AP003080.1-202ENST00000526526 915 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 MTND2P26-201ENST00000528255 1029 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AL356057.1-201ENST00000533798 831 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 SETP1-201ENST00000556014 845 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AC021749.1-201ENST00000604322 607 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AL360219.1-201ENST00000610230 366 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 RPSAP73-201ENST00000614820 330 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AC021106.3-201ENST00000623925 531 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 AL513185.3-201ENST00000433335 1300 ntBASIC5.72□□□□□ -1.49
TDP1Q9NUW8 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
TDP1Q9NUW8 BX005019.1-201ENST00000561881 1810 ntBASIC5.71□□□□□ -1.49
TDP1Q9NUW8 AC138393.1-206ENST00000540997 1886 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC007342.5-201ENST00000571340 2142 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 MIR133B-201ENST00000362210 119 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 RNU1-136P-201ENST00000384181 164 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC104297.1-201ENST00000393779 870 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AL356131.1-201ENST00000405826 414 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC096921.1-201ENST00000411661 375 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 RPL23AP27-201ENST00000415161 451 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 MFSD13B-201ENST00000420133 1290 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 NPM1P22-201ENST00000427761 952 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 FAM96AP1-201ENST00000430879 482 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 USP24P1-201ENST00000433802 779 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 ARAFP2-201ENST00000440565 559 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 FAR2P1-206ENST00000449736 709 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 RPL12P39-201ENST00000455456 496 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 NECAP1P2-201ENST00000455668 727 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 RPL7P48-201ENST00000461513 746 ntBASIC5.71□□□□□ -1.5
TDP1Q9NUW8 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.71□□□□□ -1.5
TDP1Q9NUW8 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms