Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AP003355.1-201ENST00000518956 587 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC051619.2-201ENST00000559063 397 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 PDCD6IPP2-207ENST00000566321 1069 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 MIR1269B-201ENST00000580405 75 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
NKX3-1Q99801 MIR3176-201ENST00000582210 90 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC026790.2-201ENST00000606282 430 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 MIR6837-201ENST00000620884 64 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 AL138955.1-201ENST00000622881 1040 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC021106.3-201ENST00000623925 531 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
NKX3-1Q99801 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
NKX3-1Q99801 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC011447.7-201ENST00000624228 1590 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 AP001642.1-201ENST00000624727 2117 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
NKX3-1Q99801 AC000374.1-201ENST00000434698 1745 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
NKX3-1Q99801 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
NKX3-1Q99801 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.43□□□□□ -1.7
NKX3-1Q99801 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
NKX3-1Q99801 UGT2B26P-201ENST00000508672 1613 ntBASIC4.43□□□□□ -1.7
NKX3-1Q99801 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
NKX3-1Q99801 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
NKX3-1Q99801 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 RNU6-481P-201ENST00000384194 107 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC013442.1-201ENST00000397347 228 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 ATF1P1-201ENST00000406040 927 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 MIR1178-201ENST00000408396 91 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 RN7SKP278-201ENST00000410504 342 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 RNA5SP296-201ENST00000410523 111 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 TATDN1P1-201ENST00000414123 891 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 BX664727.1-201ENST00000416024 466 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 VN1R37P-201ENST00000419096 748 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 AL133325.1-201ENST00000421090 382 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 RPL7L1P9-201ENST00000431298 745 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 MTCYBP12-201ENST00000440559 1134 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC023512.1-201ENST00000444513 499 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 RPS26P41-201ENST00000450370 284 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 DNAJB5P1-201ENST00000454004 806 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 FCF1P6-201ENST00000456841 595 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 HSPE1P22-201ENST00000456856 327 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 EIF1P7-201ENST00000487533 337 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 RN7SL30P-201ENST00000488416 306 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC097173.1-201ENST00000505862 819 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC104115.2-201ENST00000523026 687 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 CIR1P1-201ENST00000524055 1133 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
NKX3-1Q99801 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC016180.1-201ENST00000567945 403 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC083843.3-201ENST00000623679 2186 ntBASIC4.42□□□□□ -1.7
NKX3-1Q99801 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
NKX3-1Q99801 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
NKX3-1Q99801 AC235565.1-201ENST00000456962 1325 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms