Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 FCF1P6-201ENST00000456841 595 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC093166.4-201ENST00000457867 318 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 RN7SL738P-201ENST00000470264 297 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC098976.1-201ENST00000513014 541 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 SNORA43.3-201ENST00000517240 103 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 NELL2-211ENST00000548826 559 ntTSL 2 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AL110118.1-201ENST00000553543 400 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC009852.2-201ENST00000567898 485 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 MIR4480-201ENST00000582492 71 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AP003117.1-201ENST00000602771 554 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AL158050.2-201ENST00000605336 568 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AP001033.2-201ENST00000609701 1003 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AL359513.1-201ENST00000614364 557 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AL138955.1-201ENST00000622881 1040 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AC022919.1-201ENST00000624979 626 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 PDZK1P1-202ENST00000425209 1350 ntBASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
PDLIM3Q53GG5 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 CYP4Z2P-201ENST00000423332 1512 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 AC104623.2-202ENST00000623477 4002 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 ATP5A1P1-201ENST00000454088 1321 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 AC012618.3-205ENST00000637896 1496 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 RNU6-252P-201ENST00000363232 107 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 U8.4-201ENST00000363626 134 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 RNA5SP30-201ENST00000365552 115 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 HIST1H3PS1-201ENST00000404612 417 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 SNORA11C-201ENST00000408532 129 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 RNU2-17P-201ENST00000410290 190 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 RNU6-603P-201ENST00000411403 107 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 AK4P4-201ENST00000419465 646 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 RPS20P1-201ENST00000434853 354 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 AC016772.1-201ENST00000444170 1261 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 IGBP1P3-201ENST00000447449 1000 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 RPL7AP52-201ENST00000458096 790 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 APOOP2-201ENST00000461561 539 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 AC072052.1-201ENST00000496556 306 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 AC093801.2-201ENST00000503966 1050 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 MTCO3P27-201ENST00000514397 196 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 AP003355.1-201ENST00000518956 587 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 RAB9BP1-201ENST00000519581 626 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 CIR1P1-201ENST00000524055 1133 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 HMGN2P36-201ENST00000529541 409 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 OR5AM1P-201ENST00000532136 1032 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 NMNAT1P5-201ENST00000559657 841 ntBASIC4.51□□□□□ -1.69
PDLIM3Q53GG5 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 183.9 ms